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Series GSE68401 Query DataSets for GSE68401
Status Public on Aug 25, 2015
Title Enhancer activation during EGF response
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We investigated the acetylation of H3K27, in normal condition and after stimulation of EGF and before or after the depletion of INTS11. Additionally, we examined transcription by sequencing the chromatin-bound fraction of RNA and by fractionating total RNA into polyadenylated and non-polyadenylated compartement.
Overall design Comparison of the genome wide profiles of H3K27ac and RNA in HeLa cells
Contributor(s) Gardini A, Lai F, Zhang A, Shiekhattar R
Citation(s) 26308897
Submission date Apr 29, 2015
Last update date May 15, 2019
Contact name Alessandro Gardini
Phone 305-243-7394
Organization name University of Miami
Department Sylvester Comprehensive Cancer Center
Lab Ramin Shiekhattar
Street address 1501 NW 10 Avenue
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (30)
GSM1670864 CTRL_K27_rep1
GSM1670865 CTRL_EGF_K27_rep1
GSM1670866 DOX_K27_rep1
BioProject PRJNA282652
SRA SRP057804

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68401_RAW.tar 15.8 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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