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Series GSE67633 Query DataSets for GSE67633
Status Public on Dec 08, 2015
Title Epigenetic determinants of self-renewal in glioblastoma [ATAC-seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We over-expressed an epigenetic regulator in a glioblastoma (GBM) primary culture from an adult patient. These GBM cells have cancer stem cell phenotypes, as they have self-renewal properties and tumor initiation potential when transplanted in immunocompromised mice. ATAC-seq was performed on cells over-expressing the epigenetic regulator and control cells expressing EGFP.
Overall design ATAC-Seq on glioblastoma cells that over-express EGFP or an epigenetic regulator.
Contributor(s) Gallo M, Dirks P, Murison A, Lupien M
Citation(s) 26626085
Submission date Apr 07, 2015
Last update date May 15, 2019
Contact name Alexander James Murison
Organization name University Health Network
Lab Dick Lab
Street address 101 College Street, TMDT room 11-706
City Toronto
State/province Ontario
ZIP/Postal code M5G 1L7
Country Canada
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (12)
GSM1652448 E1 ATAC Seq
GSM1652449 E1_input_ATAC Seq
GSM1652450 E2 ATAC Seq
BioProject PRJNA280596
SRA SRP056968

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE67633_RAW.tar 470.0 Kb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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