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Series GSE66694 Query DataSets for GSE66694
Status Public on May 20, 2015
Title Drop-Seq analysis of ERCC spike in capture
Organism synthetic construct
Experiment type Expression profiling by high throughput sequencing
Other
Summary A bead supsension and a solution of ERCC spike-ins at a concentration of ~100,000 molecules per droplet was used in Drop-Seq, a novel technology for high-throughput single cell mRNAseq
 
Overall design An estimated 84 beads were selected for amplification.
 
Contributor(s) Macosko EZ
Citation(s) 26000488, 32888429
Submission date Mar 09, 2015
Last update date Apr 25, 2022
Contact name Evan Macosko
E-mail(s) emacosko@genetics.med.harvard.edu
Organization name Harvard Medical School
Department Genetics
Lab McCarroll Lab
Street address 77 Avenue Louis Pasteur, NRB 260
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL19424 Illumina NextSeq 500 (synthetic construct)
Samples (1)
GSM1629193 ERCC at high sequencing depth (84 beads)
This SubSeries is part of SuperSeries:
GSE63473 Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
Relations
BioProject PRJNA277735
SRA SRP056001

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE66694_RAW.tar 11.4 Gb (http)(custom) TAR (of BAM, FASTA, GTF, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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