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Series GSE66693 Query DataSets for GSE66693
Status Public on May 20, 2015
Title Drop-Seq analysis of mixtures of human (HEK) and mouse (3T3) cells (1000/100 STAMPs) at 12.5 cells per microliter
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary A cell supsension containing an equal mix of HEK and 3T3 cells was used in Drop-Seq, a novel technology for high-throughput single cell mRNAseq. Cells were mixed at a final concentration of 12.5 cells per microliter in droplets.
Overall design An estimated 570 STAMPs were selected for amplification.
Contributor(s) Macosko EZ
Citation(s) 26000488, 32888429
Submission date Mar 09, 2015
Last update date Apr 25, 2022
Contact name Evan Macosko
Organization name Harvard Medical School
Department Genetics
Lab McCarroll Lab
Street address 77 Avenue Louis Pasteur, NRB 260
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL19415 Illumina NextSeq 500 (Homo sapiens; Mus musculus)
Samples (1)
GSM1629192 Human-mouse 12.5 cells / ul (~570 STAMPs)
This SubSeries is part of SuperSeries:
GSE63473 Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
BioProject PRJNA277734
SRA SRP056000

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE66693_RAW.tar 14.0 Gb (http)(custom) TAR (of BAM, TXT)
GSE66693_hg19_mm10_transgenes_reference_metadata.tar.gz 1.7 Gb (ftp)(http) TAR
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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