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Series GSE66301 Query DataSets for GSE66301
Status Public on Feb 26, 2015
Title Gene expression profiling of patient's DCIS-IDC tandem lesions by RNA sequencing analysis
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Tandem DCIS/IDC are defined as ductal carcicnoma in situ (DCIS) lesions that have concurrent invasive ductal carcinoma (IDC) within the same breast. These are identified radiologically by an area of clustered microcalcifications adjacent to (contiguous with) an invasive mass. Our radiologist (Dr. William P. Smith) has provided us with biopsy cores from each region. One core from each region (DCIS and IDC) has bas been collected and subjected to RNA sequencing for our studies to compare changes from DCIS to IDC in each individual patient.
Overall design 6 pairs of DCIS-IDC samples were collected, and analysed by RNA sequencing
Contributor(s) Smith WP, Valdez K, Michaels W, Hook M, Chein J, Behbod F
Citation(s) 31907974
Submission date Feb 25, 2015
Last update date Jun 10, 2020
Contact name Hanan Elsarraj
Organization name University of Kansas Medical Center
Department Pathology and Laboratory Medicine
Lab Fariba Behbod
Street address 3901 Rainbow Blvd.
City Kansas City
State/province KS
ZIP/Postal code 66160
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (12)
GSM1619122 DCIS-Patient1
GSM1619123 DCIS-Patient2
GSM1619124 DCIS-Patient3
BioProject PRJNA276455
SRA SRP055512

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Supplementary file Size Download File type/resource
GSE66301_DCIS_vs_IDC_six_pairs.xlsx 7.8 Mb (ftp)(http) XLSX
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