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Series GSE66192 Query DataSets for GSE66192
Status Public on Apr 08, 2015
Title A study of the effect of OxLDL on C/EBP beta binding in human macrophages using chromatin immunoprecipitation for C/EBP beta with high throughput sequencing (ChIP-seq)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report the C/EBP beta transcription factor binding landscape in human macrophages and oxLDL-induced foam cells
Overall design ChIP-seq for C/EBP beta binding was performed in human macrophages and oxLDL induced-foam cells with quadruple biological replicates
Contributor(s) Reschen ME, O'Callaghan CA
Citation(s) 25835000
Submission date Feb 23, 2015
Last update date May 15, 2019
Contact name Christopher O'Callaghan
Phone +44 (0)1865 287794
Organization name University of Oxford
Department Nuffield Department of Medicine
Lab O'Callaghan Lab - Henry Wellcome Building for Molecular Physiology
Street address Roosevelt Drive
City Oxford
State/province Oxfordshire
ZIP/Postal code OX3 7BN
Country United Kingdom
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (8)
GSM1616709 C/EBP beta_Macrophage-control_201
GSM1616710 C/EBP beta_Macrophage-control_202
GSM1616711 C/EBP beta_Macrophage-control_203
This SubSeries is part of SuperSeries:
GSE54975 Lipid-induced epigenomic changes in human macrophages identify a coronary artery disease associated variant that regulates PPAP2B expression through altered C/EBP-beta binding
BioProject PRJNA276088
SRA SRP055419

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE66192_MACS2_control_cell_peaks.txt.gz 1.4 Mb (ftp)(http) TXT
GSE66192_MACS2_foam_cell_peaks.txt.gz 1.7 Mb (ftp)(http) TXT
GSE66192_diffreps_CEBPB.txt.gz 517.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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