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Series GSE65078 Query DataSets for GSE65078
Status Public on Jan 19, 2015
Title Genetic Variation, Not Cell Type of Origin, Underlies Regulatory Differences in iPSCs [Methylation]
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Analysis of contribution of cell type of origin and individual to gene expression differences in iPSCs. The hypothesis tested in the present study was that cell type of origin affects iPSC gene expression. Results show that individual has a much stronger effect than cell type of origin on differences between iPSCs derived from multiple individuals.
Overall design DNA obtained from feeder-free iPSCs derived from multiple individuals and tissues and their corresponding cell type of origin
Contributor(s) Kagan CL, Banovich NE, Pavlovic BJ, Patterson K, Gallego Romero I, Pritchard JK
Citation(s) 26812582
Submission date Jan 19, 2015
Last update date Mar 22, 2019
Contact name Nicholas E Banovich
Organization name University of Chicago
Department Human Genetics
Lab Gilad
Street address 920 E. 58th Street, CLSC 317
City Chicago
State/province IL
ZIP/Postal code 60453
Country USA
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (24)
GSM1586887 Ind1_F-iPSC [Methylation]
GSM1586888 Ind2_L-iPSC_repC [Methylation]
GSM1586889 Ind3_L-iPSC_repB [Methylation]
This SubSeries is part of SuperSeries:
GSE65079 Genetic Variation, Not Cell Type of Origin, Underlies Regulatory Differences in iPSCs
BioProject PRJNA272899

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65078_RAW.tar 379.4 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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