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Series GSE64987 Query DataSets for GSE64987
Status Public on May 31, 2016
Title Extra-coding RNAs regulate neuronal DNA methylation and long-term memory formation [MBD-seq]
Organism Rattus norvegicus
Experiment type Methylation profiling by high throughput sequencing
Summary This dataset contains whole-genome MBD (methylbinding domain) sequencing results from cortical neuronal cultures and serves as the basis for characterization of DNA methylation profiles from neuronal systems.
Overall design This experiment contains three sequencing datasets from 2 biological samples. Two datasets originate from samples that underwent MBD-capture prior to whole-genome sequencing. A third dataset contains non-MBD-captured genomic DNA as a control.
Contributor(s) Savell KE, Gallus N, Song E, Simon R, Osborn MK, Brown J, O'Malley JJ, Sweatt JD, Day JJ
Citation(s) 27384705
Submission date Jan 14, 2015
Last update date May 15, 2019
Contact name Jeremy Jason Day
Phone 205-996-8960
Organization name UAB
Department Neurobiology
Lab Day
Street address 1825 University Blvd
City Birmingham
State/province AL
ZIP/Postal code 35294
Country USA
Platforms (1)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (3)
GSM1585507 MBD-1
GSM1585508 MBD-2
GSM1585509 MBD-IN
This SubSeries is part of SuperSeries:
GSE64988 Extra-coding RNAs regulate neuronal DNA methylation dynamics
BioProject PRJNA272629
SRA SRP052243

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE64987_MBD-seq_RPM-All_genes_GeneBody.txt.gz 497.5 Kb (ftp)(http) TXT
GSE64987_MBD-seq_RPM-All_genes_Promoter.txt.gz 373.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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