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Series GSE64417 Query DataSets for GSE64417
Status Public on Jun 25, 2015
Title Induction of circular RNA in fetal heart development recapitulated in in vitro differentiation
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We discovered induction of circular RNA in human fetal tissues, including the heart. In this study, we were able to recapitulate this induction by in vitro directed differentiation of hESCs to cardiomyocytes, paving the way for future studies into circular RNA regulation.
Overall design We harvested hESCs at sequential stages of differentiation: undifferentiated (day 0), mesoderm (day 2), cardiac progenitor (day 5) and definitive cardiomyocyte (day 14). We performed RNA sequencing in biological triplicate, with 3-8 technical replicates each.
Contributor(s) Szabo L
Citation(s) 26076956
Submission date Dec 22, 2014
Last update date May 15, 2019
Contact name Linda Szabo
Organization name Stanford University
Department Biochemistry
Lab Salzman Lab
Street address Beckman Center, B400 279 W. Campus Dr. MC: 5307
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (71)
GSM1571055 D0_undiff_1_1
GSM1571056 D0_undiff_1_2
GSM1571057 D0_undiff_1_3
BioProject PRJNA270993
SRA SRP051472

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE64417_RAW.tar 152.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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