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GEO accession:
Series GSE64183
Query DataSets for GSE64183
Status
Public on Jun 01, 2015
Title
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
26392366
Submission date
Dec 15, 2014
Last update date
May 15, 2019
Contact name
Alain Pacis
E-mail(s)
alain.pacis@mcgill.ca
Organization name
Canadian Centre for Computational Genomics (C3G)
Street address
740 Dr Penfield Ave
City
Montreal
State/province
QC
ZIP/Postal code
H3A 0G1
Country
Canada
Platforms (2)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
Samples (62)
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More...
GSM1565734
DC_MTB (ATAC-Seq)
GSM1565735
DC_NI (ATAC-Seq)
GSM1565787
DC_MTB_H3K27ac_rep1 (ChIP-Seq)
GSM1565788
DC_MTB_H3K27me3_rep1 (ChIP-Seq)
GSM1565789
DC_MTB_H3K36me3_rep1 (ChIP-Seq)
GSM1565790
DC_MTB_H3K4me1_rep1 (ChIP-Seq)
GSM1565791
DC_MTB_H3K4me3_rep1 (ChIP-Seq)
GSM1565792
DC_MTB_H3K9me3_rep1 (ChIP-Seq)
GSM1565793
DC_MTB_Input_rep1 (ChIP-Seq)
GSM1565794
DC_NI_H3K27ac_rep1 (ChIP-Seq)
GSM1565795
DC_NI_H3K27me3_rep1 (ChIP-Seq)
GSM1565796
DC_NI_H3K36me3_rep1 (ChIP-Seq)
GSM1565797
DC_NI_H3K4me1_rep1 (ChIP-Seq)
GSM1565798
DC_NI_H3K4me3_rep1 (ChIP-Seq)
GSM1565799
DC_NI_H3K9me3_rep1 (ChIP-Seq)
GSM1565800
DC_NI_Input_rep1 (ChIP-Seq)
GSM1565801
DC_MTB_H3K27ac_rep2 (ChIP-Seq)
GSM1565802
DC_MTB_H3K27me3_rep2 (ChIP-Seq)
GSM1565803
DC_MTB_H3K36me3_rep2 (ChIP-Seq)
GSM1565804
DC_MTB_H3K4me1_rep2 (ChIP-Seq)
GSM1565805
DC_MTB_H3K4me3_rep2 (ChIP-Seq)
GSM1565806
DC_MTB_H3K9me3_rep2 (ChIP-Seq)
GSM1565807
DC_MTB_Input_rep2 (ChIP-Seq)
GSM1565808
DC_NI_H3K27ac_rep2 (ChIP-Seq)
GSM1565809
DC_NI_H3K27me3_rep2 (ChIP-Seq)
GSM1565810
DC_NI_H3K36me3_rep2 (ChIP-Seq)
GSM1565811
DC_NI_H3K4me1_rep2 (ChIP-Seq)
GSM1565812
DC_NI_H3K4me3_rep2 (ChIP-Seq)
GSM1565813
DC_NI_H3K9me3_rep2 (ChIP-Seq)
GSM1565814
DC_NI_Input_rep2 (ChIP-Seq)
GSM1565939
DC_MTB_rep1 (Bisulfite-Seq)
GSM1565940
DC_NI_rep1 (Bisulfite-Seq)
GSM1565941
DC_MTB_rep2 (Bisulfite-Seq)
GSM1565942
DC_NI_rep2 (Bisulfite-Seq)
GSM1565943
DC_MTB_rep3 (Bisulfite-Seq)
GSM1565944
DC_NI_rep3 (Bisulfite-Seq)
GSM1565945
DC_MTB_rep4 (Bisulfite-Seq)
GSM1565946
DC_NI_rep4 (Bisulfite-Seq)
GSM1565947
DC_MTB_rep5 (Bisulfite-Seq)
GSM1565948
DC_NI_rep5 (Bisulfite-Seq)
GSM1565949
DC_MTB_rep6 (Bisulfite-Seq)
GSM1565950
DC_NI_rep6 (Bisulfite-Seq)
GSM1565955
DC_MTB_rep1 (RNA-Seq)
GSM1565956
DC_NI_rep1 (RNA-Seq)
GSM1565957
DC_MTB_rep2 (RNA-Seq)
GSM1565958
DC_NI_rep2 (RNA-Seq)
GSM1565959
DC_MTB_rep3 (RNA-Seq)
GSM1565960
DC_NI_rep3 (RNA-Seq)
GSM1565961
DC_MTB_rep4 (RNA-Seq)
GSM1565962
DC_NI_rep4 (RNA-Seq)
GSM1565963
DC_MTB_rep5 (RNA-Seq)
GSM1565964
DC_NI_rep5 (RNA-Seq)
GSM1565965
DC_MTB_rep6 (RNA-Seq)
GSM1565966
DC_NI_rep6 (RNA-Seq)
GSM1565995
DC_MTB (TAB-Seq)
GSM1565996
DC_NI (TAB-Seq)
GSM1565997
DC_MTB_rep1 [wtRNA-Seq]
GSM1565998
DC_NI_rep1 [wtRNA-Seq]
GSM1565999
DC_MTB_rep2 [wtRNA-Seq]
GSM1566000
DC_NI_rep2 [wtRNA-Seq]
GSM1566001
DC_MTB_rep3 [wtRNA-Seq]
GSM1566002
DC_NI_rep3 [wtRNA-Seq]
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE64173
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (ATAC-Seq)
GSE64175
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (ChIP-Seq)
GSE64177
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (Bisulfite-Seq)
GSE64179
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (mRNA-Seq)
GSE64181
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (TAB-Seq)
GSE64182
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (wtRNA-Seq)
Relations
BioProject
PRJNA270811
Download family
Format
SOFT formatted family file(s)
SOFT
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MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE64183_RAW.tar
7.4 Gb
(http)
(custom)
TAR (of BW, TXT)
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