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Series GSE63989 Query DataSets for GSE63989
Status Public on Dec 09, 2015
Title Dynamic interplay between the transcriptome and methylome in response to oxidative and alkylating stress
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Methyl radicals are not able to form 5'methylcytosine directly. However, tert-butylhydroperoxide-induced responses in the transcriptome are partly regulated by the methylome to restore normal cellular function
Overall design Cells were exposed to tert-butylhydroperoxide (TBH, Sigma) at a concentrations of 200 ┬ÁM for 1, 8 and 24 hours
Contributor(s) Deferme L
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Submission date Dec 09, 2014
Last update date Dec 10, 2015
Contact name Lize Deferme
Organization name Maastricht University
Department TGX
Street address Universiteitssingel 50
City Maastricht
State/province Limburg
ZIP/Postal code 6200MD
Country Netherlands
Platforms (1)
GPL16284 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
Samples (18)
GSM1561842 562642: HepG2_Contr_1h_repl 1
GSM1561843 561671: HepG2_Contr_1h_repl 2
GSM1561844 561767: HepG2_Contr_1h_repl 3
BioProject PRJNA269728

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63989_Matrix_Meth_TBH_1h.txt.gz 129.0 Mb (ftp)(http) TXT
GSE63989_Matrix_Meth_TBH_24h.txt.gz 129.0 Mb (ftp)(http) TXT
GSE63989_Matrix_Meth_TBH_8h.txt.gz 129.1 Mb (ftp)(http) TXT
GSE63989_RAW.tar 1.7 Gb (http)(custom) TAR (of PAIR)
Processed data are available on Series record

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