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Series GSE63933 Query DataSets for GSE63933
Status Public on Apr 24, 2015
Title Onchocerca-derived small RNAs in host nodules and serum
Organisms Homo sapiens; Bos taurus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We report the presence of Onchocerca ochengi and O. volvulus derived small RNAs in bovine nodule fluids and human serum and plasma, respectively. Further comparisons with other related filarial nematodes like Litomosoides sigmodontis and Dirofilaria immitis reveal common and distictive signatures associated to the Onchocerca species.
Overall design Examination of small RNA content in bovine nodule fluids and human serum/plasma by Next Generation sequencing
Contributor(s) Quintana JF, Makepeace BL, Babayan S, Ivens AC, Pfarr K, Blaxter M, Debrah A, Wanji S, Ngangyung HF, Bah GS, Tanya VN, Taylor DW, Hoerauf A, Buck AH
Citation(s) 25623184
Submission date Dec 06, 2014
Last update date May 15, 2019
Contact name Alasdair Ivens
Phone 44 131 6513605
Organization name Centre for Immunity, Infection and Evolution
Street address Kings Buildings
City Edinburgh
ZIP/Postal code EH9 3FL
Country United Kingdom
Platforms (2)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL19172 Illumina HiSeq 2500 (Bos taurus)
Samples (5)
GSM1560560 O. ochengi nodule fluids
GSM1560561 Uninfected (European) human serum
GSM1560562 Infected (Cameroonian) human serum
BioProject PRJNA269539
SRA SRP050878

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63933_RAW.tar 3.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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