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Series GSE63704 Query DataSets for GSE63704
Status Public on Nov 30, 2015
Title Epigenome analysis of normal and cancer, lung fibrosis and COPD fresh frozen tissue samples
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary In a comparative study the genome wide methylation levels using Illumina Infinium 450k chips were assigned. The specific methylation pattern of lung cancer patients (n=17), patients suffering from idiopathic lung fibrosis (n=37) as well as 32 patients suffering from chronic obstructive pulmonary disease and 43 DNA samples derived from healthy-lungs were determined. Lung biopsy samples were obtained by bronchoscopy. Thus obtained tissue was snap frozen in liquid nitrogen. Classification of lung fibrosis patients base on CT scans of the affected lung.
Overall design Bisulfite converted DNA from the 129 samples were hybridised to the Illumina HumanMethylation450 BeadChip v1.2
Contributor(s) Wielscher M
Citation(s) 26425700
Submission date Nov 28, 2014
Last update date Nov 15, 2021
Contact name Matthias Wielscher
Organization name Austrian Institute of Technology
Department Health and Enviroment
Street address Muthgasse 11
City Vienna
ZIP/Postal code 1190
Country Austria
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (129)
GSM1555750 genomic DNA from lung tissue1
GSM1555751 genomic DNA from lung tissue2
GSM1555752 genomic DNA from lung tissue3
BioProject PRJNA268834

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63704_Avrg_Beta.txt.gz 494.4 Mb (ftp)(http) TXT
GSE63704_RAW.tar 183.1 Mb (http)(custom) TAR
GSE63704_non_normalized.txt.gz 302.1 Mb (ftp)(http) TXT
GSE63704_normalized_beta_without_Pvalue.txt.gz 483.4 Mb (ftp)(http) TXT
Processed data are available on Series record
Processed data included within Sample table

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