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Series GSE62670 Query DataSets for GSE62670
Status Public on Apr 08, 2016
Title Epigenome analysis of dnmt target sites [DKO8 cell line]
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling of target sites of dnmt3b isoforms in HCT derivative cell line DKO8. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 450,000 CpGs
Overall design Bisulphite converted DNA from the samples were hybridised to the Illumina Infinium 450k Human Methylation Beadchip
Contributor(s) Duymich CE, Jones PA
Citation(s) 27121154
Submission date Oct 23, 2014
Last update date Mar 22, 2019
Contact name Peter A Jones
Organization name University of Southern California
Department Urology
Lab Peter A. Jones
Street address 1441 Eastlake Ave NOR7344
City Los Angeles
State/province California
ZIP/Postal code 90089
Country USA
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (8)
GSM1531259 DKO8 infected with EV control
GSM1531260 DKO8 infected with DNMT3B1
GSM1531261 DKO8 infected with DNMT3B1-M
This SubSeries is part of SuperSeries:
GSE68344 Epigenome analysis of dnmt target sites
BioProject PRJNA264748

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE62670_1131_Duymich_background_corrected_beta_values.txt.gz 30.2 Mb (ftp)(http) TXT
GSE62670_1131_Duymich_uncorrected_beta_values.txt.gz 30.3 Mb (ftp)(http) TXT
GSE62670_HM450_SNP_repeat_masking_120913.csv.gz 4.8 Mb (ftp)(http) CSV
GSE62670_RAW.tar 248.0 Mb (http)(custom) TAR (of IDAT)
GSE62670_signal_intensities.txt.gz 44.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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