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Series GSE62086 Query DataSets for GSE62086
Status Public on Aug 27, 2015
Title Low dose of DNA-demethylating agents target colorectal cancer-initiating cells by activation of RIG1/MAVS signaling pathway
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling of 3 patient-derived colorectal cancer samples with different CIMP profiles. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 450,000 CpGs
Overall design Bisulphite converted DNA from the 3 samples were hybridised to the Illumina HumanMethylation450 BeadChip
Contributor(s) De Carvalho D, Singhania R
Citation(s) 26317465
Submission date Oct 06, 2014
Last update date Mar 22, 2019
Contact name Daniel De Carvalho
Organization name Princess Margaret Cancer Centre
Street address 101 College St
City Toronto
State/province ON
ZIP/Postal code M5G 1L7
Country Canada
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (3)
GSM1519484 genomic DNA from colorectal cancer sample #73 (non-CIMP)
GSM1519485 genomic DNA from colorectal cancer sample #92 (CIMP high)
GSM1519486 genomic DNA from colorectal cancer sample #181 (CIMP low)
BioProject PRJNA263174

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE62086_RAW.tar 183.1 Mb (http)(custom) TAR
GSE62086_unmethylated_methylated_intensities.txt.gz 9.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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