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GEO accession:
Series GSE61953
Query DataSets for GSE61953
Status
Public on Oct 30, 2014
Title
Genome-wide chromatin analysis of Ewing sarcoma
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
25453903
Submission date
Oct 01, 2014
Last update date
May 15, 2019
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platforms (2)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
Samples (70)
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More...
GSM1517537
FLI1 ChIP-seq in SKMNC
GSM1517538
H3K27ac ChIP-seq in SKMNC
GSM1517539
H3K4me1 ChIP-seq in SKMNC
GSM1517540
H3K27me3 ChIP-seq in SKMNC
GSM1517541
H3K4me3 ChIP-seq in SKMNC
GSM1517542
WDR5 ChIP-seq in SKMNC
GSM1517543
SKMNC whole cell extract
GSM1517544
FLI1 ChIP-seq in SKMNC 48hrs shGFP
GSM1517545
H3K27ac ChIP-seq in SKMNC 48hrs shGFP
GSM1517546
FLI1 ChIP-seq in SKMNC 96hrs shGFP96
GSM1517547
H3K27ac ChIP-seq in SKMNC 96hrs shGFP
GSM1517548
H3K4me1 ChIP-seq in SKMNC 96hrs shGFP
GSM1517549
H3K27me3 ChIP-seq in SKMNC 96hrs shGFP
GSM1517550
GABPA ChIP-seq in SKMNC 96hrs shGFP
GSM1517551
ELF1 ChIP-seq in SKMNC 96 hrs shGFP
GSM1517552
p300 ChIP-seq in SKMNC 96 hrs shGFP
GSM1517553
FLI1 ChIP-seq in SKMNC 48hrs shFLI1
GSM1517554
H3K27ac ChIP-seq in SKMNC 48hrs shFLI1
GSM1517555
FLI1 ChIP-seq in SKMNC 96hrs shFLI1
GSM1517556
H3K27ac ChIP-seq in SKMNC 96hrs shFLI1
GSM1517557
H3K4me1 ChIP-seq in SKMNC 96hrs shFLI1
GSM1517558
H3K27me3 ChIP-seq in SKMNC 96hrs shFLI1
GSM1517559
GABPA ChIP-seq in SKMNC 96hrs shFLI1
GSM1517560
ELF1 ChIP-seq in SKMNC 96hrs shFLI1
GSM1517561
p300 ChIP-seq in SKMNC 96hrs shFLI1
GSM1517562
FLI1 ChIP-Seq in A673
GSM1517563
H3K27ac ChIP-Seq in A673
GSM1517564
H3K4me1 ChIP-Seq in A673
GSM1517565
H3K27me3 ChIP-Seq in A673
GSM1517566
H3K4me3 ChIP-Seq in A673
GSM1517567
WDR5 ChIP-seq in A673
GSM1517568
A673 whole cell extract
GSM1517569
FLI1 ChIP-seq in A673 48hrs shGFP
GSM1517570
H3K27ac ChIP-seq in A673 48hrs shGFP
GSM1517571
H3K27ac ChIP-seq in A673 96hrs shGFP
GSM1517572
FLI1 ChIP-seq in A673 48hrs shFLI1
GSM1517573
H3K27ac ChIP-seq in A673 48hrs shFLI1
GSM1517574
H3K27ac ChIP-seq in A673 96hrs shFLI1
GSM1517575
H3K27ac ChIP-seq in MSC
GSM1517576
H3K4me1 ChIP-seq in MSC
GSM1517577
H3K27ac ChIP-seq in MSC with EWSFLI1
GSM1517578
H3K4me1 ChIP-seq in MSC with EWSFLI1
GSM1517579
H3K27ac ChIP-seq in MSC with empty vector
GSM1517580
H3K4me1 ChIP-seq in MSC with empty vector
GSM1517581
WDR5 ChIP-seq in MSC with empty vector
GSM1517582
WDR5 ChIP-seq in MSC with EWSFLI1
GSM1517583
H3K27ac in primary Ewing sarcoma 2
GSM1517584
H3K27ac in primary Ewing sarcoma 3
GSM1517585
H3K27ac in primary Ewing sarcoma 4
GSM1517586
H3K4me1 in primary Ewing sarcoma 1
GSM1517587
H3K4me1 in primary Ewing sarcoma 2
GSM1517588
H3K4me1 in primary Ewing sarcoma 3
GSM1517589
H3K4me3 in primary Ewing sarcoma 1
GSM1517590
H3K4me3 in primary Ewing sarcoma 2
GSM1517591
H3K4me3 in primary Ewing sarcoma 3
GSM1517592
H3K27me3 in primary Ewing sarcoma 1
GSM1517593
H3K27me3 in primary Ewing sarcoma 2
GSM1517594
H3K27me3 in primary Ewing sarcoma 4
GSM1517595
Primary Ewing sarcoma 2 WCE
GSM1517596
Primary Ewing sarcoma 3 WCE
GSM1517597
Primary Ewing sarcoma 4 WCE
GSM1517626
RNA-seq SKNMC shGFP 48 hrs
GSM1517627
RNA-seq SKNMC shFLI1 48 hrs
GSM1517628
RNA-seq SKNMC shGFP 96 hrs
GSM1517629
RNA-seq SKNMC shFLI1 96 hrs
GSM1517630
RNA-seq A673 shGFP 48 hrs
GSM1517631
RNA-seq A673 shFLI1 48 hrs
GSM1517632
ATAC-Seq SKNMC
GSM1517633
ATAC-Seq MSC pLIV empty
GSM1517634
ATAC-seq MCS pLIV EWS-FLI1
This SuperSeries is composed of the following SubSeries:
GSE61944
Genome-wide chromatin analysis of Ewing sarcoma (ChIP-seq)
GSE61950
Genome-wide chromatin analysis of Ewing sarcoma (RNA-seq)
GSE61951
Genome-wide chromatin analysis of Ewing sarcoma (ATAC-seq)
Relations
BioProject
PRJNA262777
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE61953_RAW.tar
18.5 Gb
(http)
(custom)
TAR (of BW, TXT)
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