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Series GSE61673 Query DataSets for GSE61673
Status Public on Aug 24, 2015
Title Nkx2.2, Nkx6.1, Olig2, and Gli3 genomic binding regions in neural progenitors [ChIP-Seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Nkx2.2, Nkx6.1, and Olig2 are transcriptional repressors regulating somatic motor neuron and interneuron subtypes in neural progenitors. The purpose of this study was to identify their target genes and to elucidate their gene regulatory mechanisms, including their relationship to Sonic Hedgehog/Gli pathway.
Overall design Nkx2.2, Nkx6.1, Olig2, and Gli3 binding profiles were determined by ChIP-seq in neural progenitors derived in vitro from mouse embryonic stem cells
Contributor(s) Nishi Y, McMahon AP
Citation(s) 26293298
Submission date Sep 23, 2014
Last update date May 15, 2019
Contact name Yuichi Nishi
Phone 323-442-8077
Organization name University of Southern California
Department Eli and Edythe Broad-CIRM Center for Regenerative Medicine
Lab Andrew McMahon
Street address 1425 San Pablo St.
City Los Angeles
State/province CA
ZIP/Postal code 90033
Country USA
Platforms (3)
GPL9250 Illumina Genome Analyzer II (Mus musculus)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (13)
GSM1511107 Nkx2.2_NPC_ChIP-seq_rep1
GSM1511108 Nkx6.1_NPC_ChIP-seq_rep1
GSM1511109 Olig2_NPC_ChIP-seq_rep1
This SubSeries is part of SuperSeries:
GSE65462 Nkx2.2, Nkx6.1, Olig2, and Gli3 genomic binding regions and overexpression in neural progenitors
BioProject PRJNA261806
SRA SRP047421

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61673_Nkx22_CP11-ML6-ML36_heatmap.txt.gz 2.2 Mb (ftp)(http) TXT
GSE61673_Nkx61_CP33-ML2-ML17_heatmap.txt.gz 1.4 Mb (ftp)(http) TXT
GSE61673_Olig2_CP10-ML4-ML17_heatmap.txt.gz 5.2 Mb (ftp)(http) TXT
GSE61673_RAW.tar 220.0 Kb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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