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Series GSE61441 Query DataSets for GSE61441
Status Public on Oct 26, 2015
Title Epigenome analysis of clear cell renal cell carcinoma (ccRCC) tissue versus matched normal kidney tissue
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome wide DNA methylation profiling of clear cell renal cell carcinoma (ccRCC) tissue versus matched normal kidney tissue. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 450,000 CpGs in tumor and adjacent normal kidney tissue samples from ccRCC patients. Samples included 46 paired fresh frozen ccRCC tumor and adjacent normal kidney tissues.
 
Overall design Bisulphite converted DNA from the 92 samples were hybridised to the Illumina Infinium 450 Human Methylation Beadchip v1.2
 
Contributor(s) Luo J
Citation(s) 26515236
Submission date Sep 15, 2014
Last update date Mar 22, 2019
Contact name jinhuan wei
E-mail(s) weijh23@mail.sysu.edu.cn
Organization name SYSU
Street address No.58 zhongshan 2rd Road
City Guangzhou
ZIP/Postal code 510080
Country China
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (92)
GSM1504808 genomic DNA from 2014ccRCC01T
GSM1504809 genomic DNA from 2014ccRCC01N
GSM1504810 genomic DNA from 2014ccRCC02T
Relations
BioProject PRJNA261077

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61441_Normalized_data.csv.gz 102.1 Mb (ftp)(http) CSV
GSE61441_RAW.tar 943.2 Mb (http)(custom) TAR (of IDAT)
GSE61441_Unmethylated_and_methylated_signal_intensities.csv.gz 219.2 Mb (ftp)(http) CSV
Processed data included within Sample table
Processed data are available on Series record
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