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| Status |
Public on Nov 01, 2014 |
| Title |
Methylation analysis of choroid plexus tumors |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
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| Summary |
The methylation status of a cohort of choroid plexus tumors was examined and unsupervised hierarchical clustering was used to identify molecular distinct clusters of samples.
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| Overall design |
Tumor DNA was extracted from 36 frozen choroid plexus tumors (15 CPCs, 16 choroid plexus papillomas, 5 achoroid plexus papillomas). Samples were bisulfite converted and analyzed on Illumina 450K Infinium methylation bead arrays. No replicates were used
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| Contributor(s) |
Merino DM, Shlien A, Villani A, Pienkowska M, Mack SC, Ramaswamy V, Shih DJ, Tatevossian R, Novokmet A, Choufani S, Dvir R, Ben-Arush M, Harris BT, Hwang EI, Lulla RR, Pfister SM, Achatz Ml, Jabado N, Finlay JL, Weksberg R, Hawkins C, Taylor MD, Tabori U, Ellison DW, Gilbertson RJ, Malkin D |
| Citation(s) |
25336695, 31409384 |
| Submission date |
Sep 03, 2014 |
| Last update date |
Aug 21, 2019 |
| Contact name |
Diana M Merino |
| E-mail(s) |
diana.merino@utoronto.ca
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| Organization name |
The Hospital for Sick Children
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| Department |
Genetics and Genome Biology
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| Lab |
Malkin
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| Street address |
686 Bay St.
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5V0A4 |
| Country |
Canada |
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| Platforms (1) |
| GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
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| Samples (36)
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| This SubSeries is part of SuperSeries: |
| GSE60886 |
Molecular characterization of choroid plexus tumors reveals novel clinically relevant subgroups |
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| Relations |
| BioProject |
PRJNA260138 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE61044_450K-36CPT-Beta-output.txt.gz |
85.4 Mb |
(ftp)(http) |
TXT |
| GSE61044_450K-36CPT-Methylated-output.txt.gz |
38.1 Mb |
(ftp)(http) |
TXT |
| GSE61044_450K-36CPT-Pvals-output.txt.gz |
1.7 Mb |
(ftp)(http) |
TXT |
| GSE61044_450K-36CPT-UnMethylated-output.txt.gz |
37.2 Mb |
(ftp)(http) |
TXT |
| GSE61044_RAW.tar |
183.1 Mb |
(http)(custom) |
TAR |
| Processed data included within Sample table |
| Processed data are available on Series record |
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