GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE61044 Query DataSets for GSE61044
Status Public on Nov 01, 2014
Title Methylation analysis of choroid plexus tumors
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary The methylation status of a cohort of choroid plexus tumors was examined and unsupervised hierarchical clustering was used to identify molecular distinct clusters of samples.
Overall design Tumor DNA was extracted from 36 frozen choroid plexus tumors (15 CPCs, 16 choroid plexus papillomas, 5 achoroid plexus papillomas). Samples were bisulfite converted and analyzed on Illumina 450K Infinium methylation bead arrays. No replicates were used
Contributor(s) Merino DM, Shlien A, Villani A, Pienkowska M, Mack SC, Ramaswamy V, Shih DJ, Tatevossian R, Novokmet A, Choufani S, Dvir R, Ben-Arush M, Harris BT, Hwang EI, Lulla RR, Pfister SM, Achatz Ml, Jabado N, Finlay JL, Weksberg R, Hawkins C, Taylor MD, Tabori U, Ellison DW, Gilbertson RJ, Malkin D
Citation(s) 25336695, 31409384
Submission date Sep 03, 2014
Last update date Aug 21, 2019
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (36)
GSM1495900 CP59-T
GSM1495901 CP47-T
GSM1495902 CP112-T
This SubSeries is part of SuperSeries:
GSE60886 Molecular characterization of choroid plexus tumors reveals novel clinically relevant subgroups
BioProject PRJNA260138

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61044_450K-36CPT-Beta-output.txt.gz 85.4 Mb (ftp)(http) TXT
GSE61044_450K-36CPT-Methylated-output.txt.gz 38.1 Mb (ftp)(http) TXT
GSE61044_450K-36CPT-Pvals-output.txt.gz 1.7 Mb (ftp)(http) TXT
GSE61044_450K-36CPT-UnMethylated-output.txt.gz 37.2 Mb (ftp)(http) TXT
GSE61044_RAW.tar 183.1 Mb (http)(custom) TAR
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap