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Series GSE60899 Query DataSets for GSE60899
Status Public on Nov 01, 2014
Title Genome-wide copy number and allele-specific copy number analysis of choroid plexus tumors (I)
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary Copy number analysis was performed using genotyping microarrays for 55 choroid plexus tumors. Genomic aberrations were investigated by tumor histological classification and the pattern observed in each subgroup was further refined. Allele specific copy number analysis also allowed us to identify regions of acquired uniparental disomy with neutral copy number values.
Overall design Fifty-five choroid plexus tumors (23 choroid plexus carcinomas, 23 choroid plexus papillomas, 9 atypical choroid plexus papillomas) were used in this study. These samples were inspected for hybridization quality. No replicates were included.
Contributor(s) Merino DM, Shlien A, Villani A, Pienkowska M, Mack SC, Ramaswamy V, Shih DJ, Tatevossian R, Novokmet A, Choufani S, Dvir R, Ben-Arush M, Harris BT, Hwang EI, Lulla RR, Pfister SM, Achatz MI, Jabado N, Finlay JL, Weksberg R, Hawkins C, Taylor MD, Tabori U, Ellison DW, Gilbertson RJ, Malkin D
Citation(s) 25336695
Submission date Aug 28, 2014
Last update date Nov 27, 2018
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (55)
GSM1493229 CP1-T
GSM1493230 CP103-T
GSM1493231 CP104-T
This SubSeries is part of SuperSeries:
GSE60886 Molecular characterization of choroid plexus tumors reveals novel clinically relevant subgroups
BioProject PRJNA259772

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE60899_DMM-CPT-55GenomSeg-AlleleRatio.txt.gz 182.4 Mb (ftp)(http) TXT
GSE60899_DMM-CPT-55GenomSeg-CopyNum.txt.gz 325.8 Mb (ftp)(http) TXT
GSE60899_RAW.tar 1.6 Gb (http)(custom) TAR (of CEL)
Processed data included within Sample table
Processed data are available on Series record

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