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GEO accession:
Series GSE60144
Query DataSets for GSE60144
Status
Public on Dec 11, 2015
Title
Dual RNA-seq of diverse human, mouse and pig cell-types infected with various Salmonella strains
Organisms
Homo sapiens
;
Sus scrofa
;
Mus musculus
;
Salmonella enterica subsp. enterica serovar Typhimurium
;
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Experiment type
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Contributor(s)
Westermann AJ
,
Förstner KU
,
Amman F
,
Barquist LE
,
Schulte LN
,
Chao Y
,
Müller L
,
Reinhardt R
,
Stadler PF
,
Vogel J
Citation(s)
26789254
Submission date
Aug 06, 2014
Last update date
May 15, 2019
Contact name
Konrad U. Förstner
E-mail(s)
foerstner@zbmed.de
Organization name
ZB MED - Information Centre for Life Sciences
Department
Information Services
Lab
Förstner Lab
Street address
Gleueler Str. 60
City
Cologne
State/province
North Rhine-Westphalia
ZIP/Postal code
50931
Country
Germany
Platforms (8)
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GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL20050
Illumina HiSeq 2000 (Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)
GPL20051
Illumina NextSeq 500 (Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)
GPL20062
Illumina MiSeq (Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)
GPL20063
Illumina MiSeq (Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)
GPL20064
Illumina NextSeq 500 (Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)
GPL20065
Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Sus scrofa)
GPL21220
Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Typhimurium)
Samples (279)
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GSM1655351
0 h WT LB replicate 1
GSM1655352
0 h WT input replicate 1
GSM1655353
4 h mock GFP- replicate 1
GSM1655354
4 h WT GFP+ replicate 1
GSM1655355
4 h WT GFP- replicate 1
GSM1655356
24 h mock GFP- replicate 1
GSM1655357
24 h WT GFP+ replicate 1
GSM1655358
24 h WT GFP- replicate 1
GSM1655359
0 h WT LB replicate 2
GSM1655360
0 h WT input replicate 2
GSM1655361
4 h mock GFP- replicate 2
GSM1655362
4 h WT GFP+ replicate 2
GSM1655363
4 h WT GFP- replicate 2
GSM1655364
24 h mock GFP- replicate 2
GSM1655365
24 h WT GFP+ replicate 2
GSM1655366
24 h WT GFP- replicate 2
GSM1655367
0 h WT LB replicate 3
GSM1655368
0 h WT input replicate 3
GSM1655369
4 h mock GFP- replicate 3
GSM1655370
4 h WT GFP+ replicate 3
GSM1655371
4 h WT GFP- replicate 3
GSM1655372
24 h mock GFP- replicate 3
GSM1655373
24 h WT GFP+ replicate 3
GSM1655374
24 h WT GFP- replicate 3
GSM1655401
16h_WT+_total
GSM1655402
16h_WT+_RiboZero
GSM1659495
SPI-1 empty vector 5 min ara replicate 1
GSM1659496
SPI-1 pinT vector 5 min ara replicate 1
GSM1659497
SPI-1 empty vector 5 min ara replicate 2
GSM1659498
SPI-1 pinT vector 5 min ara replicate 2
GSM1659499
SPI-2 (in vitro) empty vector 5 min ara replicate 1
GSM1659500
SPI-2 (in vitro) pinT vector 5 min ara replicate 1
GSM1659501
SPI-2 (in vitro) empty vector 5 min ara replicate 2
GSM1659502
SPI-2 (in vitro) pinT vector 5 min ara replicate 2
GSM1659503
SPI-2 (in vivo) empty vector 5 min ara replicate 1
GSM1659504
SPI-2 (in vivo) pinT vector 5 min ara replicate 1
GSM1659505
SPI-2 (in vivo) empty vector 5 min ara replicate 2
GSM1659506
SPI-2 (in vivo) pinT vector 5 min ara replicate 2
GSM1659507
16 h mock infection replicate 1
GSM1659508
16 h mock infection replicate 2
GSM1659509
16 h wildtype replicate 1
GSM1659510
16 h wildtype replicate 2
GSM1659511
16 h pinT replicate 1
GSM1659512
16 h pinT replicate 2
GSM1659513
16 h pinT* replicate 1
GSM1659514
16 h pinT* replicate 2
GSM1924754
ΔpinT infection 0 h replicate 1
GSM1924755
ΔpinT infection 0 h replicate 2
GSM1924756
ΔpinT infection 0 h replicate 3
GSM1924757
ΔpinT infection 2 h replicate 1
GSM1924758
ΔpinT infection 2 h replicate 2
GSM1924759
ΔpinT infection 2 h replicate 3
GSM1924760
ΔpinT infection 4 h replicate 1
GSM1924761
ΔpinT infection 4 h replicate 2
GSM1924762
ΔpinT infection 4 h replicate 3
GSM1924763
ΔpinT infection 8 h replicate 1
GSM1924764
ΔpinT infection 8 h replicate 2
GSM1924765
ΔpinT infection 8 h replicate 3
GSM1924766
ΔpinT infection 16 h replicate 1
GSM1924767
ΔpinT infection 16 h replicate 2
GSM1924768
ΔpinT infection 16 h replicate 3
GSM1924769
ΔpinT infection 24 h replicate 1
GSM1924770
ΔpinT infection 24 h replicate 2
GSM1924771
ΔpinT infection 24 h replicate 3
GSM1924772
Wild-type infection 0 h replicate 1
GSM1924773
Wild-type infection 0 h replicate 2
GSM1924774
Wild-type infection 0 h replicate 3
GSM1924775
Wild-type infection 2 h replicate 1
GSM1924776
Wild-type infection 2 h replicate 2
GSM1924777
Wild-type infection 2 h replicate 3
GSM1924778
Wild-type infection 4 h replicate 1
GSM1924779
Wild-type infection 4 h replicate 2
GSM1924780
Wild-type infection 4 h replicate 3
GSM1924781
Wild-type infection 8 h replicate 1
GSM1924782
Wild-type infection 8 h replicate 2
GSM1924783
Wild-type infection 8 h replicate 3
GSM1924784
Wild-type infection 16 h replicate 1
GSM1924785
Wild-type infection 16 h replicate 2
GSM1924786
Wild-type infection 16 h replicate 3
GSM1924787
Wild-type infection 24 h replicate 1
GSM1924788
Wild-type infection 24 h replicate 2
GSM1924789
Wild-type infection 24 h replicate 3
GSM1924790
Mock 2 h replicate 1
GSM1924791
Mock 2 h replicate 2
GSM1924792
Mock 2 h replicate 3
GSM1924793
Mock 4 h replicate 1
GSM1924794
Mock 4 h replicate 2
GSM1924795
Mock 4 h replicate 3
GSM1924796
Mock 8 h replicate 1
GSM1924797
Mock 8 h replicate 2
GSM1924798
Mock 8 h replicate 3
GSM1924799
Mock 16 h replicate 1
GSM1924800
Mock 16 h replicate 2
GSM1924801
Mock 16 h replicate 3
GSM1924802
Mock 24 h replicate 1
GSM1924803
Mock 24 h replicate 2
GSM1924804
Mock 24 h replicate 3
GSM1967249
3D4/31 WT 00 h replicate 1
GSM1967250
3D4/31 WT 00 h replicate 2
GSM1967251
3D4/31 WT 00 h replicate 3
GSM1967252
3D4/31 WT 01 h replicate 1
GSM1967253
3D4/31 WT 01 h replicate 2
GSM1967254
3D4/31 WT 01 h replicate 3
GSM1967255
3D4/31 WT 02 h replicate 1
GSM1967256
3D4/31 WT 02 h replicate 2
GSM1967257
3D4/31 WT 02 h replicate 3
GSM1967258
3D4/31 WT 06 h replicate 1
GSM1967259
3D4/31 WT 06 h replicate 2
GSM1967260
3D4/31 WT 06 h replicate 3
GSM1967261
3D4/31 WT 16 h replicate 1
GSM1967262
3D4/31 WT 16 h replicate 2
GSM1967263
3D4/31 WT 16 h replicate 3
GSM1967264
AGS WT 00 h replicate 1
GSM1967265
AGS WT 00 h replicate 2
GSM1967266
AGS WT 04 h replicate 1
GSM1967267
AGS WT 04 h replicate 2
GSM1967268
AGS WT 24 h replicate 1
GSM1967269
AGS WT 24 h replicate 2
GSM1967270
BMDM WT 00 h replicate 1
GSM1967271
BMDM WT 00 h replicate 2
GSM1967272
BMDM WT 02 h replicate 1
GSM1967273
BMDM WT 02 h replicate 2
GSM1967274
BMDM WT 06 h replicate 1
GSM1967275
BMDM WT 06 h replicate 2
GSM1967276
BMDM WT 20 h replicate 1
GSM1967277
BMDM WT 20 h replicate 2
GSM1967278
CaCo-2 WT 00 h replicate 1
GSM1967279
CaCo-2 WT 00 h replicate 2
GSM1967280
CaCo-2 WT 04 h replicate 1
GSM1967281
CaCo-2 WT 04 h replicate 2
GSM1967282
CaCo-2 WT 24 h replicate 1
GSM1967283
CaCo-2 WT 24 h replicate 2
GSM1967284
HEK WT 00 h replicate 1
GSM1967285
HEK WT 00 h replicate 2
GSM1967286
HEK WT 04 h replicate 1
GSM1967287
HEK WT 04 h replicate 2
GSM1967288
HEK WT 24 h replicate 1
GSM1967289
HEK WT 24 h replicate 2
GSM1967290
HT29 WT 00 h replicate 1
GSM1967291
HT29 WT 00 h replicate 2
GSM1967292
HT29 WT 02 h replicate 1
GSM1967293
HT29 WT 02 h replicate 2
GSM1967294
HT29 WT 20 h replicate 1
GSM1967295
HT29 WT 20 h replicate 2
GSM1967296
IPEC-J2 WT 00 h replicate 1
GSM1967297
IPEC-J2 WT 00 h replicate 2
GSM1967298
IPEC-J2 WT 02 h replicate 1
GSM1967299
IPEC-J2 WT 02 h replicate 2
GSM1967300
IPEC-J2 WT 20 h replicate 1
GSM1967301
IPEC-J2 WT 20 h replicate 2
GSM1967302
L929 WT 00 h replicate 1
GSM1967303
L929 WT 00 h replicate 2
GSM1967304
L929 WT 01 h replicate 1
GSM1967305
L929 WT 01 h replicate 2
GSM1967306
L929 WT 06 h replicate 1
GSM1967307
L929 WT 06 h replicate 2
GSM1967308
LoVo WT 00 h replicate 1
GSM1967309
LoVo WT 00 h replicate 2
GSM1967310
LoVo WT 02 h replicate 1
GSM1967311
LoVo WT 02 h replicate 2
GSM1967312
LoVo WT 20 h replicate 1
GSM1967313
LoVo WT 20 h replicate 2
GSM1967314
MEF WT 00 h replicate 1
GSM1967315
MEF WT 00 h replicate 2
GSM1967316
MEF WT 04 h replicate 1
GSM1967317
MEF WT 04 h replicate 2
GSM1967318
MEF WT 20 h replicate 1
GSM1967319
MEF WT 20 h replicate 2
GSM1967320
RAW264.7 WT 00 h replicate 1
GSM1967321
RAW264.7 WT 00 h replicate 2
GSM1967322
RAW264.7 WT 04 h replicate 1
GSM1967323
RAW264.7 WT 04 h replicate 2
GSM1967324
RAW264.7 WT 24 h replicate 1
GSM1967325
RAW264.7 WT 24 h replicate 2
GSM1967326
THP-1 without PMA WT 00 h replicate 1
GSM1967327
THP-1 without PMA WT 00 h replicate 2
GSM1967328
THP-1 without PMA WT 04 h replicate 1
GSM1967329
THP-1 without PMA WT 04 h replicate 2
GSM1967330
THP-1 without PMA WT 24 h replicate 1
GSM1967331
THP-1 without PMA WT 24 h replicate 2
GSM1967332
THP-1 with PMA WT 00 h replicate 1
GSM1967333
THP-1 with PMA WT 00 h replicate 2
GSM1967334
THP-1 with PMA WT 04 h replicate 1
GSM1967335
THP-1 with PMA WT 04 h replicate 2
GSM1967336
THP-1 with PMA WT 24 h replicate 1
GSM1967337
THP-1 with PMA WT 24 h replicate 2
GSM1967350
3D4 31 ΔpinT 00 h replicate 1
GSM1967351
3D4 31 ΔpinT 00 h replicate 2
GSM1967352
3D4 31 ΔpinT 00 h replicate 3
GSM1967353
3D4 31 ΔpinT 01 h replicate 1
GSM1967354
3D4 31 ΔpinT 01 h replicate 2
GSM1967355
3D4 31 ΔpinT 01 h replicate 3
GSM1967356
3D4 31 ΔpinT 02 h replicate 1
GSM1967357
3D4 31 ΔpinT 02 h replicate 2
GSM1967358
3D4 31 ΔpinT 02 h replicate 3
GSM1967359
3D4 31 ΔpinT 06 h replicate 1
GSM1967360
3D4 31 ΔpinT 06 h replicate 2
GSM1967361
3D4 31 ΔpinT 06 h replicate 3
GSM1967362
3D4 31 ΔpinT 16 h replicate 1
GSM1967363
3D4 31 ΔpinT 16 h replicate 2
GSM1967364
3D4 31 ΔpinT 16 h replicate 3
GSM1967365
3D4 31 WT 00 h replicate 1
GSM1967366
3D4 31 WT 00 h replicate 2
GSM1967367
3D4 31 WT 00 h replicate 3
GSM1967368
3D4 31 WT 01 h replicate 1
GSM1967369
3D4 31 WT 01 h replicate 2
GSM1967370
3D4 31 WT 01 h replicate 3
GSM1967371
3D4 31 WT 02 h replicate 1
GSM1967372
3D4 31 WT 02 h replicate 2
GSM1967373
3D4 31 WT 02 h replicate 3
GSM1967374
3D4 31 WT 06 h replicate 1
GSM1967375
3D4 31 WT 06 h replicate 2
GSM1967376
3D4 31 WT 06 h replicate 3
GSM1967377
3D4 31 WT 16 h replicate 1
GSM1967378
3D4 31 WT 16 h replicate 2
GSM1967379
3D4 31 WT 16 h replicate 3
GSM1967380
3D4 31 mock 01 h replicate 1
GSM1967381
3D4 31 mock 01 h replicate 2
GSM1967382
3D4 31 mock 01 h replicate 3
GSM1967905
in vitro ComppinT 00 h R1
GSM1967906
in vitro ComppinT 00 h R2
GSM1967907
in vitro ComppinT 00 h R3
GSM1967908
in vitro ComppinT 01 h R1
GSM1967909
in vitro ComppinT 01 h R2
GSM1967910
in vitro ComppinT 01 h R3
GSM1967911
in vitro ΔpinT 00 h R1
GSM1967912
in vitro ΔpinT 00 h R2
GSM1967913
in vitro ΔpinT 00 h R3
GSM1967914
in vitro ΔpinT 01 h R1
GSM1967915
in vitro ΔpinT 01 h R2
GSM1967916
in vitro ΔpinT 01 h R3
GSM1967917
in vitro WT 00 h R1
GSM1967918
in vitro WT 00 h R2
GSM1967919
in vitro WT 00 h R3
GSM1967920
in vitro WT 01 h R1
GSM1967921
in vitro WT 01 h R2
GSM1967922
in vitro WT 01 h R3
GSM1967923
0 h ΔomrA/B replicate 1
GSM1967924
0 h ΔomrA/B replicate 2
GSM1967925
0 h ΔomrA/B replicate 3
GSM1967926
4 h ΔomrA/B replicate 1
GSM1967927
4 h ΔomrA/B replicate 2
GSM1967928
4 h ΔomrA/B replicate 3
GSM1967929
16 h ΔomrA/B replicate 1
GSM1967930
16 h ΔomrA/B replicate 2
GSM1967931
16 h ΔomrA/B replicate 3
GSM1967932
0 h ΔryhB/ΔisrE replicate 1
GSM1967933
0 h ΔryhB/ΔisrE replicate 2
GSM1967934
0 h ΔryhB/ΔisrE replicate 3
GSM1967935
4 h ΔryhB/ΔisrE replicate 1
GSM1967936
4 h ΔryhB/ΔisrE replicate 2
GSM1967937
4 h ΔryhB/ΔisrE replicate 3
GSM1967938
16 h ΔryhB/ΔisrE replicate 1
GSM1967939
16 h ΔryhB/ΔisrE replicate 2
GSM1967940
16 h ΔryhB/ΔisrE replicate 3
GSM1967941
0 h ΔyrlA/B replicate 1
GSM1967942
0 h ΔyrlA/B replicate 2
GSM1967943
0 h ΔyrlA/B replicate 3
GSM1967944
4 h ΔyrlA/B replicate 1
GSM1967945
4 h ΔyrlA/B replicate 2
GSM1967946
4 h ΔyrlA/B replicate 3
GSM1967947
16 h ΔyrlA/B replicate 1
GSM1967948
16 h ΔyrlA/B replicate 2
GSM1967949
16 h ΔyrlA/B replicate 3
GSM1967950
0 h WT replicate 1
GSM1967951
0 h WT replicate 2
GSM1967952
0 h WT replicate 3
GSM1967953
4 h WT replicate 1
GSM1967954
4 h WT replicate 2
GSM1967955
4 h WT replicate 3
GSM1967956
16 h WT replicate 1
GSM1967957
16 h WT replicate 2
GSM1967958
16 h WT replicate 3
GSM1967959
4 h mock replicate 1
GSM1967960
4 h mock replicate 2
GSM1967961
4 h mock replicate 3
GSM1967962
16 h mock replicate 1
GSM1967963
16 h mock replicate 2
GSM1967964
16 h mock replicate 3
This SuperSeries is composed of the following SubSeries:
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GSE67757
Dual RNA-seq – Pilot Dual RNA-seq
GSE67758
Dual RNA-seq – High-resolution comparative Dual RNA-seq time-course
GSE67759
Dual RNA-seq – rRNA depletion establishment
GSE67947
Dual RNA-seq – sRNA profiling in various cell types
GSE67948
Dual RNA-seq – Comparative Dual RNA-seq in pig macrophages
GSE67949
Dual RNA-seq – Comparative RNA-seq (in vitro medium shift experiment)
GSE67950
Dual RNA-seq – Pulse-expression of pinT
GSE67951
Dual RNA-seq – Host response to pinT*
GSE67952
Dual RNA-seq – Dual RNA-seq of further sRNA mutants
Relations
BioProject
PRJNA258453
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Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary data files not provided
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