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Series GSE59592 Query DataSets for GSE59592
Status Public on Apr 18, 2015
Title DNA methylome analysis in infants from The Gambia / Aflatoxin / Seasonality study
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling in infant's blood from a mother/child cohort in The Gambia. The main variables of the analyses were the intra-uterine exposure to aflatoxin B1 (AFB1) and the season of conception.
The Illumina Infinium HumanMethylation 450k Beadchip was used to obtain DNA methylation profiles across approximately 450,000 CpGs in whole peripheral blood obtained at 3-6 months of age. A total of 124 samples were analysed, including 3 technical replicates.
Overall design Bisulphite converted DNA from the 124 samples were hybridised to the Illumina Infinium HumanMethylation 450k Beadchip
Contributor(s) Hernandez-Vargas H, Silver M
Citation(s) 25855716, 26062908, 29034560, 35267594
Submission date Jul 18, 2014
Last update date Mar 24, 2022
Contact name Hector Hernandez-Vargas
Organization name Centre Léon Bérard
Street address 28 rue Laennec, 69373 Lyon cedex 08
City Lyon
State/province Lyon
ZIP/Postal code 69008
Country France
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (124)
GSM1439943 7990895016_R05C02
GSM1439944 7471147005_R02C02
GSM1439945 6164621132_R03C01
BioProject PRJNA255668

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE59592_GEO_betas_raw.csv.gz 466.2 Mb (ftp)(http) CSV
GSE59592_RAW.tar 183.1 Mb (http)(custom) TAR
GSE59592_further_processed_data.txt.gz 14.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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