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Series GSE59550 Query DataSets for GSE59550
Status Public on Feb 13, 2017
Title Ethnic specific genetic variation alters smoking associated DNA methylation at HIV co-receptor GPR15
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome wide DNA methylation profiling of smokers and non-smokers in PBMC samples. The Illumina Infinium 450k Human DNA methylation Beadchip v1.1 was used to obtain DNA methylation profiles across 485,577 CpGs in PBMC samples. Samples included 24 smokers and 28 non-smokers.
Overall design Bisulfite converted DNA from the 52 samples were hybridized to the Illumina Infinium 450k Human Methylation Beadchip v1.1
Contributor(s) Philibert RA
Citation(s) 26441693
Submission date Jul 18, 2014
Last update date Mar 22, 2019
Contact name Robert A Philibert
Phone 3193534986
Organization name University of Iowa
Department Psychiatry
Street address MEB, 500 Newton Road, Room 2-126D
City Iowa City
State/province Iowa
ZIP/Postal code 52242
Country USA
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (52)
GSM1439316 genomic DNA from PBMC 1
GSM1439317 genomic DNA from PBMC 2
GSM1439318 genomic DNA from PBMC 3
BioProject PRJNA255635

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE59550_RAW.tar 183.1 Mb (http)(custom) TAR
GSE59550_matrix_processed_GEO.txt.gz 72.3 Mb (ftp)(http) TXT
GSE59550_matrix_signal_GEO.txt.gz 118.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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