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Series GSE58619 Query DataSets for GSE58619
Status Public on Sep 10, 2015
Title Genome-wide transcriptome analyses by the RNA-seq method
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We performed the whole transcriptome analysis in Zscan4 positive ES cells (Em+) and Zscan4 negative ES cells (Em-) by using FACS-sorted MC1-ZE7 ES cells.
Overall design Whole RNA-seq in Zscan4 positive and negative cells
Contributor(s) Oda M, Sharov A, Dudekula D, Qian Y
Citation(s) 26324425
Submission date Jun 18, 2014
Last update date May 15, 2019
Contact name Minoru S.H. Ko
Phone 410-558-8359
Organization name NIH
Department National Institute on Aging
Lab Lab of Genetics
Street address 251 Bayview Blvd, Suite 100, 10C
City Baltimore
State/province MD
ZIP/Postal code 21224
Country USA
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (4)
GSM1415501 MC1-ZE7 cells (Em+ high fraction) rep1
GSM1415502 MC1-ZE7 cells (Em+ high fraction) rep2
GSM1415503 MC1-ZE7 cells (Em-) rep1
This SubSeries is part of SuperSeries:
GSE51682 Zscan4 mediates transient remodeling and transcriptional burst of heterochromatin in mouse embryonic stem cells
BioProject PRJNA253029
SRA SRP043376

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58619_fpkm_encode_mm10.txt.gz 2.3 Mb (ftp)(http) TXT
GSE58619_fpkm_ensembl_mm10.txt.gz 2.3 Mb (ftp)(http) TXT
GSE58619_fpkm_known_genes_mm10.txt.gz 1.4 Mb (ftp)(http) TXT
GSE58619_fpkm_refseq_mm10.txt.gz 859.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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