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Series GSE58520 Query DataSets for GSE58520
Status Public on Jan 01, 2015
Title Comparative FAIRE-seq analysis reveals distinguishing features of the chromatin structure of ground state- and primed pluripotent cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We utilized FAIRE-seq to identify accesible chromatin in mouse embryonic-, epiblast-, and neural- stem cells in addition to mouse embryonic fibroblasts. Analysis of these data sets reveal cell type specific chromatin signatures that differentiate naïve and primed pluripotency. Functional analysis of type-specific peaks revealed cell-type specific enhancers.
Overall design FAIRE-seq of mESC, EpiSC, NSC and MEF
Contributor(s) Murtha M, Dailey L
Citation(s) 25335464
Submission date Jun 16, 2014
Last update date May 15, 2019
Contact name Matthew Murtha
Phone 2129929171
Organization name NYU School of Medicine
Department Microbiology
Lab Dailey
Street address 550 First Ave
City New York
State/province NY
ZIP/Postal code 10016
Country USA
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (10)
GSM1412927 ESC_FAIRE-Rep1
GSM1412928 ESC_FAIRE-Rep2
GSM1412929 NSC_FAIRE-Rep1
BioProject PRJNA252824
SRA SRP043270

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Supplementary file Size Download File type/resource
GSE58520_RAW.tar 203.4 Mb (http)(custom) TAR (of BED, WIG)
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Raw data are available in SRA
Processed data provided as supplementary file

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