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| Status |
Public on Mar 24, 2015 |
| Title |
Rlf, a widely-spaced zinc finger protein, is involved in maintaining epigenetic marks at CpG island shores and enhancer elements across the genome |
| Organism |
Mus musculus |
| Experiment type |
Methylation profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We recently identified a novel protein, Rearranged L-myc fusion (Rlf), that is required for DNA hypomethylation (and transcriptional activity) at certain regions of the mouse genome known to be sensitive to epigenetic gene silencing. Here we report the analysis of 12 whole genome bisulphite sequencing datasets across three different embryonic tissues/stages from mice with and without Rlf. We find that its absence has effects at thousands of differentially methylated regions.
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| |
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| Overall design |
Whole genome bilsulphite sequencing, RNAseq and H3K4me1 ChIP-seq for wild type and mice homozygous null for Rlf (MommeD28/MommeD28)
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| Contributor(s) |
Whitelaw E, Oey H, Harten S |
| Citation(s) |
25857663 |
| Submission date |
May 29, 2014 |
| Last update date |
Oct 17, 2019 |
| Contact name |
Harald Oey |
| Organization name |
La Trobe University
|
| Department |
Genetics
|
| Street address |
Kingsbury Drive
|
| City |
Bundoora |
| State/province |
Vic |
| ZIP/Postal code |
3086 |
| Country |
Australia |
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| Platforms (2) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (22)
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| Relations |
| BioProject |
PRJNA248920 |
| SRA |
SRP042409 |
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