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Series GSE58009 Query DataSets for GSE58009
Status Public on Aug 03, 2014
Title Required Enhancer: Matrin-3 Structure Interactions for Homeodomain Transcription Programs
Organism Rattus norvegicus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Study of the POU-homeodomain transcription factor, has revealed that, binding of Pit1-occupied enhancers to a nuclear matrin-3-rich network/architecture is a key event in effective activation of the Pit1-regulated enhancer / coding gene transcriptional program.
Overall design All ChIP-seq(s) were designed to understand the unique features, associated molecular mechanisms and functions of Matrin3 in the Homeodomain transcription study. Gro-seq Samples are used to detect gene expression between knockdown control and knockdown two key factors in our study.
Contributor(s) Skowronska-Krawczyk D, Ma Q
Citation(s) 25119036
Submission date May 27, 2014
Last update date May 15, 2019
Contact name Qi Ma
Organization name UCSD
Street address 9500 Gilman Dr,
City San Diego
ZIP/Postal code 92093
Country USA
Platforms (2)
GPL10287 Illumina Genome Analyzer II (Rattus norvegicus)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (11)
GSM1399415 Chipseq-SATB1
GSM1399416 Chipseq-matrin3
GSM1399417 Chipseq-Pit1
BioProject PRJNA248882
SRA SRP042370

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58009_RAW.tar 1.1 Gb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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