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Series GSE57853 Query DataSets for GSE57853
Status Public on Sep 24, 2014
Title Epigenome analysis of alcohol consumption in lymphocyte cell (LC) samples
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome-wide DNA methylation profiling of individuals consuming alcohol and controls in LC samples. Individuals consuming alcohol were profiled at time of intake (T1) into treatment facility and four weeks into treatment (T2). Controls were profiled once. The Illumina Infinium 450k Human DNA Methylation BeadChip v1.0 was used to obtain DNA methylation profiles across 485,577 CpGs in LC samples. Samples included 33 case subjects at T1, 26 case subjects at T2 and 33 controls.
Overall design Bisulfite-converted DNA from 92 samples were hybridized to the Illumina Infinium 450k Human Methylation BeadChip v1.0.
Contributor(s) Philibert RA
Citation(s) 25147915, 26441693, 28106943, 29704316
Submission date May 20, 2014
Last update date Oct 21, 2022
Contact name Robert Alan Philibert
Organization name University of Iowa
Street address 500 Newton Rd
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (92)
GSM1395031 Genomic DNA from LC1 at T1
GSM1395032 Genomic DNA from LC1 at T2
GSM1395033 Genomic DNA from LC2
BioProject PRJNA248237

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57853_RAW.tar 183.1 Mb (http)(custom) TAR
GSE57853_unmethylated_methylated_signal_intensities.txt.gz 179.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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