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GEO accession:
Series GSE57559
Query DataSets for GSE57559
Status
Public on Apr 08, 2016
Title
Hypersensitive Nucleosomes in Chromatin Are Intrinsic to the Structure of Active, Tissue-Specific Enhancers
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
27058788
Submission date
May 12, 2014
Last update date
May 15, 2019
Contact name
Gregory Donahue
Organization name
The University of Pennsylvania
Department
Cell & Developmental Biology
Lab
Zaret Lab
Street address
3400 Civic Center Blvd, Bldg 421
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platforms (2)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (54)
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GSM1384736
IgG ChIP-exo in Adult Liver Rep 1
GSM1384737
IgG ChIP-exo in Adult Liver Rep 2
GSM1384738
FoxA2 ChIP-exo in Adult Liver Rep 1
GSM1384739
FoxA2 ChIP-exo in Adult Liver Rep 2
GSM1384740
H2B ChIP-seq in Adult Liver Rep 1
GSM1384741
H2B ChIP-seq in Adult Liver Rep 2
GSM1384742
H3 ChIP-seq in Adult Liver Rep 1
GSM1384743
H3 ChIP-seq in Adult Liver Rep 2
GSM1384746
MNase-seq in Adult Liver Low Rep 1.0
GSM1384747
MNase-seq in Adult Liver Low Rep 1.1
GSM1384748
MNase-seq in Adult Liver Low Rep 1.2
GSM1384749
MNase-seq in Adult Liver Low Rep 2.0
GSM1384750
MNase-seq in Adult Liver Low Rep 2.1
GSM1384751
MNase-seq in Adult Liver Low Rep 2.2
GSM1384752
MNase-seq in Adult Liver High Rep 1.0
GSM1384753
MNase-seq in Adult Liver High Rep 1.1
GSM1384754
MNase-seq in Adult Liver High Rep 1.2
GSM1384755
MNase-seq in Adult Liver High Rep 2.0
GSM1384756
MNase-seq in Adult Liver High Rep 2.1
GSM1384757
MNase-seq in Adult Liver High Rep 2.2
GSM1847793
Mutant.High.Whole.Rep1.F1
GSM1847794
WT.High.Whole.Rep1.F1
GSM1847795
Mutant.High.Whole.Rep2.F1
GSM1847796
WT.High.Whole.Rep2.F1
GSM1847797
Mutant.Low.Sub.Rep1.F1
GSM1847798
Mutant.Low.Whole.Rep1.F1
GSM1847799
WT.Low.Sub.Rep1.F1
GSM1847800
WT.Low.Whole.Rep1.F1
GSM1847801
Mutant.Low.Sub.Rep2.F1
GSM1847802
Mutant.Low.Whole.Rep2.F1
GSM1847803
WT.Low.Sub.Rep2.F1
GSM1847804
WT.Low.Whole.Rep2.F1
GSM1847805
Mutant.High.Whole.Rep1.F2
GSM1847806
WT.High.Whole.Rep1.F2
GSM1847807
Mutant.High.Whole.Rep2.F2
GSM1847808
WT.High.Whole.Rep2.F2
GSM1847809
Mutant.Low.Sub.Rep1.F2
GSM1847810
Mutant.Low.Whole.Rep1.F2
GSM1847811
WT.Low.Sub.Rep1.F2
GSM1847812
WT.Low.Whole.Rep1.F2
GSM1847813
Mutant.Low.Sub.Rep2.F2
GSM1847814
Mutant.Low.Whole.Rep2.F2
GSM1847815
WT.Low.Sub.Rep2.F2
GSM1847816
WT.Low.Whole.Rep2.F2
GSM2055883
FoxA3 ChIP-seq in WT Mice
GSM2055884
FoxA3 ChIP-seq in FoxAflox;Alfp-Cre Mice
GSM2055885
CEBPb ChIP-seq in WT Mice
GSM2055886
CEBPb ChIP-seq in FoxAflox;Alfp-Cre Mice
GSM2055887
HNF4a ChIP-seq in WT Mice
GSM2055888
HNF4a ChIP-seq in FoxAflox;Alfp-Cre Mice
GSM2055889
H1 ChIP-seq in WT Mice
GSM2055890
H1 ChIP-seq in FoxAflox;Alfp-Cre Mice
GSM2055891
Input in WT Mice
GSM2055892
Input in FoxAflox;Alfp-Cre Mice
This SuperSeries is composed of the following SubSeries:
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GSE57556
Hypersensitive Nucleosomes in Chromatin Are Intrinsic to the Structure of Active, Tissue-Specific Enhancers [ChIP-exo]
GSE57557
Hypersensitive Nucleosomes in Chromatin Are Intrinsic to the Structure of Active, Tissue-Specific Enhancers [ChIP-Seq]
GSE57558
Hypersensitive Nucleosomes in Chromatin Are Intrinsic to the Structure of Active, Tissue-Specific Enhancers [MNase-Seq]
GSE71947
Pioneer transcription factor FoxA maintains an open nucleosome configuration for tissue-specific gene activation [MNase-Seq]
GSE77670
Pioneer transcription factor FoxA maintains an accessible nucleosome configuration at enhancers for tissue-specific gene activation [ChIP-seq]
Relations
BioProject
PRJNA246702
Download family
Format
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Supplementary file
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File type/resource
GSE57559_RAW.tar
8.3 Gb
(http)
(custom)
TAR (of BED, BW)
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