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Series GSE57503 Query DataSets for GSE57503
Status Public on May 09, 2015
Title Evaluation of RNA amplification and RNA-Seq library preparation protocols for spermatozoa RNA profiling
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary RNA-Seq technique was applied to investigate the effects of four cDNA amplification kits and two RNA-Seq library preparation kits to the deep sequencing results at different perspectives.
Overall design The same set of semen samples were applied to investigate the qualitative and quantitative effect of four cDNA amplification methods and two RNA-Seq library preparation methods on sperm transcript profiling.
Contributor(s) Mao S, Sendler E, Goodrich RJ, Hauser R, Krawetz SA
Citation(s) 25077492
Submission date May 09, 2014
Last update date May 15, 2019
Contact name Stephen Krawetz
Phone 313-577-6770
Organization name Wayne State University School of Medicine
Department Center for Molecular Medicine and Genetics
Lab C.S. Mott Center for Human Growth and Development
Street address 275 E. Hancock
City Detroit
State/province MI
ZIP/Postal code 48201
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (16)
GSM1383903 FFPE_Enc_100_ac
GSM1383904 FFPE_Enc_100_ac_tr
GSM1383905 FFPE_Enc_100_bc
BioProject PRJNA246558
SRA SRP041833

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57503_FPKM_ProtocolEffectOnSpermSequencing.xls.gz 5.6 Mb (ftp)(http) XLS
GSE57503_RAW.tar 1.1 Gb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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