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Series GSE56867 Query DataSets for GSE56867
Status Public on Mar 31, 2016
Title Functional analysis of KAI1
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We sequenced mRNA from mouse EML cell line under Kai1 knockdown or Kai1 overexpressing condition. KAI1 belongs to tetraspanin superfamily and is known as suppressor of tumor metastasis.
Overall design Examination of mRNA levels in wildtype (WT) and KAI1 knockdown EML cells were generated by deep sequencing, in duplicate, using Illumina GAIIx. Examination of mRNA levels in wildtype (WT) and KAI1 overexpressing EML cells were also generated in single set.
Contributor(s) Hur J, Ham S, Jeon H, Roh T, Kim H
Citation(s) 26996598
Submission date Apr 17, 2014
Last update date May 15, 2019
Contact name Tae-Young Roh
Organization name Ewha Womans University
Department Life Sciences
Lab Sysgem Genomics
Street address 52 Ewhayeodae-gil, Seodaemun-gu
City Seoul
State/province --- Select One ---
ZIP/Postal code 03760
Country South Korea
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (6)
GSM1370409 WT-control (KD) rep1
GSM1370410 KAI1-KD rep1
GSM1370411 WT-control (KD) rep2
BioProject PRJNA244829
SRA SRP041244

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56867_RAW.tar 2.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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