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Series GSE56743 Query DataSets for GSE56743
Status Public on Mar 31, 2015
Title RNA-seq profiling of microdissected rat renal tubule segments
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary We sequenced mRNAs from glomeruli and 14 different rat renal tubule segments collected by hand microdissection.
Overall design Collagenase-digested rat renal tubule segments were collected by hand microdissection. Poly(A)-mRNAs were captured from cell lysate and sequenced using paired-end protocol.
Contributor(s) Lee JW, Knepper MA
Citation(s) 25817355
Submission date Apr 11, 2014
Last update date May 15, 2019
Contact name Jae Wook Lee
Organization name National Institutes of Health
Street address 10 Center Drive, 6N314
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platforms (1)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (125)
GSM1367790 S1 proximal tubule, replicate #1
GSM1367791 S1 proximal tubule, replicate #2
GSM1367792 S1 proximal tubule, replicate #3
BioProject PRJNA244440
SRA SRP041131

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56743_CCD_median_rn5.bedgraph.gz 187.0 Mb (ftp)(http) BEDGRAPH
GSE56743_CNT_median_rn5.bedgraph.gz 126.6 Mb (ftp)(http) BEDGRAPH
GSE56743_DCT_median_rn5.bedgraph.gz 175.3 Mb (ftp)(http) BEDGRAPH
GSE56743_IMCD_median_rn5.bedgraph.gz 240.1 Mb (ftp)(http) BEDGRAPH
GSE56743_LDLIM_median_rn5.bedgraph.gz 145.5 Mb (ftp)(http) BEDGRAPH
GSE56743_LDLOM_median_rn5.bedgraph.gz 129.2 Mb (ftp)(http) BEDGRAPH
GSE56743_OMCD_median_rn5.bedgraph.gz 104.1 Mb (ftp)(http) BEDGRAPH
GSE56743_PAseq.peak.rn5.forward.bedgraph.gz 833.3 Kb (ftp)(http) BEDGRAPH
GSE56743_PAseq.peak.rn5.reverse.bedgraph.gz 798.9 Kb (ftp)(http) BEDGRAPH
GSE56743_RPKM.with.PAseq.txt.gz 6.1 Mb (ftp)(http) TXT
GSE56743_RPKM.without.PAseq.txt.gz 5.7 Mb (ftp)(http) TXT
GSE56743_S1_median_rn5.bedgraph.gz 60.7 Mb (ftp)(http) BEDGRAPH
GSE56743_S2_median_rn5.bedgraph.gz 118.7 Mb (ftp)(http) BEDGRAPH
GSE56743_S3_median_rn5.bedgraph.gz 89.8 Mb (ftp)(http) BEDGRAPH
GSE56743_SDL_median_rn5.bedgraph.gz 164.4 Mb (ftp)(http) BEDGRAPH
GSE56743_cTAL_median_rn5.bedgraph.gz 185.7 Mb (ftp)(http) BEDGRAPH
GSE56743_mTAL_median_rn5.bedgraph.gz 93.4 Mb (ftp)(http) BEDGRAPH
GSE56743_tAL_median_rn5.bedgraph.gz 164.7 Mb (ftp)(http) BEDGRAPH
GSE56743_vasopressin_escape_rpkm.txt.gz 701.2 Kb (ftp)(http) TXT
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Processed data are available on Series record

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