GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE55480 Query DataSets for GSE55480
Status Public on May 27, 2014
Title RNA-seq based characterization of long non-coding RNA involved in respiratory viruses pathogenesis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This dataset includes both whole transcriptome (WT) and mRNA-seq data for interferon-treated mouse samples. This is part of a larger study (GSE52405), where these interferon datasets were used as validation.
Overall design 6-week-old C57BL/6J mice were treated with 10,000 U of recombinant interferon (Universal Type I IFN, Recombinant Human IFN-alpha A/D [BglII], R&D Systems) dissolved in endotoxin-free phosphate-buffered saline (EF-PBS), or with EF-PBS alone. For this study, the mice at 12 hours post-treatment were used.
Contributor(s) Josset L, Tchitchek N, Gralinski LE, Ferris MT, Green R, Thomas MJ, Pardo-Manuel de Villena F, Baric RS, Heise MT, Peng X, Katze MG
Citation(s) 24922324
Submission date Feb 28, 2014
Last update date May 15, 2019
Contact name Michael Katze
Organization name University of Washington
Department Microbiology
Lab Michael G. Katze, Ph.D
Street address Rosen Building 960 Republican St.
City Seattle
State/province WA
ZIP/Postal code 98109-4325
Country USA
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (12)
GSM1337707 IM012_8_PBS_1_mRNA
GSM1337708 IM012_9_PBS_2_mRNA
GSM1337709 IM012_10_PBS_3_mRNA
BioProject PRJNA239717
SRA SRP039089

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55480_IM012_IFN_RPKM_matrix.txt.gz 549.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap