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Series GSE55391 Query DataSets for GSE55391
Status Public on May 19, 2014
Title TET1-mediated hydroxymethylation facilitates hypoxic gene induction in neuroblastoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary Analysis of 5-hydroxymethylcytosine changes in hypoxia in neuroblastoma cells
Overall design 5-hmC distribution was analyzed from cells exposed to hypoxia (1% O2) or normoxia (20% O2); mRNA was sequenced in parallel for expression analysis.
RNA-seq was done using NBL-WN cells, hMe-SEAL experiment was done using NBL-WN cells and SK-N-BE(2) cells
Contributor(s) Mariani CJ, Godley LA
Citation(s) 24835990
Submission date Feb 26, 2014
Last update date May 15, 2019
Contact name Christopher Mariani
Organization name University of Chicago
Street address 900 E 57 St
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (14)
GSM1335292 hMe-SEAL: 48 Normoxia_Rep1
GSM1335293 hMe-SEAL: 48 Hypoxia_Rep1
GSM1335294 hMe-SEAL: input
BioProject PRJNA239458
SRA SRP038987

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55391_RAW.tar 5.0 Gb (http)(custom) TAR (of TXT, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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