GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE55150 Query DataSets for GSE55150
Status Public on Aug 07, 2015
Title Desmoplastic Melanoma
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary High resolution aCGH was performed on 10 primary Desmoplastic Melanomas (DMs). DMs are a rare subtype of melanoma known for their pronounced desmoplastic stroma and spindled melanocytes. 10 samples were hybridized to Agilent 1 Million feature two color arrays as compared to a panel of normal male DNA. 6 samples were hybridized to Agilent 244K feature two color arrays as compared to a panel of normal male DNA. 34 samples were hybridized to Agilent 180K feature two color arrays as compared to a panel of normal male DNA.
Overall design 50 unique primary tumors were hybridized compared to normal male DNA.
Contributor(s) Shain AH, Bastian BC
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Feb 19, 2014
Last update date Oct 26, 2016
Contact name Alan Hunter Shain
Organization name University of California San Francisco
Department Pathology and Dermatology
Lab Boris Bastian
Street address 555 MISSION BAY SOUTH BLVD RM 282 # 3118
City San Francisco
State/province CA
ZIP/Postal code 94158-2156
Country USA
Platforms (3)
GPL4091 Agilent-014693 Human Genome CGH Microarray 244A (Feature number version)
GPL8736 Agilent-021529 Human CGH Whole Genome Microarray 1x1M (G4447A) (Feature Number version)
GPL10123 Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Feature Number version)
Samples (50)
GSM1330551 Sample 11M
GSM1330552 Sample 12M
GSM1330553 Sample 19M
BioProject PRJNA238646

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55150_RAW.tar 4.5 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap