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Series GSE54984 Query DataSets for GSE54984
Status Public on Mar 10, 2014
Title Probing Brachyury Function during ES cell differentiaiton
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To probe how Brachyury regulates its target genes, we performed mRNA-seq to analyze gene expression changes after Brachyury depletion by the lentivirus-mediated shRNA
Overall design WT and Brachytury Knockdown embryoid bodies were collected at EB day 4. Subsequently, mRNA-seq expriments were performed with whole embryoid bodies
Contributor(s) Zhe L
Citation(s) 24616493
Submission date Feb 13, 2014
Last update date May 15, 2019
Contact name Zhe Liu
Organization name Howard Hughes Medical Institute
Department Janelia Farm Research Campus
Lab Liu
Street address 19700 Helix Dr.
City Ashburn
State/province Virginia
ZIP/Postal code 20147
Country USA
Platforms (2)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (3)
GSM1327439 ES cells
GSM1327440 Control EBs
GSM1327441 Brachyury knockdown EBs
This SubSeries is part of SuperSeries:
GSE54985 Charting Brachyury-mediated Developmental Pathways During Early Mouse Embryogenesis
BioProject PRJNA238202
SRA SRP037765

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54984_Differential_Gene_Expression_Summary.xlsx.gz 4.1 Mb (ftp)(http) XLSX
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Processed data are available on Series record
Raw data are available in SRA

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