|
Status |
Public on Mar 10, 2014 |
Title |
Probing Brachyury Function during ES cell differentiaiton |
Organism |
Mus musculus |
Experiment type |
Expression profiling by high throughput sequencing
|
Summary |
To probe how Brachyury regulates its target genes, we performed mRNA-seq to analyze gene expression changes after Brachyury depletion by the lentivirus-mediated shRNA
|
|
|
Overall design |
WT and Brachytury Knockdown embryoid bodies were collected at EB day 4. Subsequently, mRNA-seq expriments were performed with whole embryoid bodies
|
|
|
Contributor(s) |
Zhe L |
Citation(s) |
24616493 |
Submission date |
Feb 13, 2014 |
Last update date |
May 15, 2019 |
Contact name |
Zhe Liu |
E-mail(s) |
liuz11@janelia.hhmi.org
|
Organization name |
Howard Hughes Medical Institute
|
Department |
Janelia Farm Research Campus
|
Lab |
Liu
|
Street address |
19700 Helix Dr.
|
City |
Ashburn |
State/province |
Virginia |
ZIP/Postal code |
20147 |
Country |
USA |
|
|
Platforms (2) |
GPL11002 |
Illumina Genome Analyzer IIx (Mus musculus) |
GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
Samples (3) |
|
This SubSeries is part of SuperSeries: |
GSE54985 |
Charting Brachyury-mediated Developmental Pathways During Early Mouse Embryogenesis |
|
Relations |
BioProject |
PRJNA238202 |
SRA |
SRP037765 |