GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE54880 Query DataSets for GSE54880
Status Public on Feb 28, 2014
Title Microarray-based DNA methylation profiling of medulloblastoma and normal cerebellum samples
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Robust molecular subgrouping and copy-number profiling of medulloblastoma from small amounts of archival tumor material.
Validation of patterns identified by whole-genome bisulphite sequencing in a larger cohort.
Overall design DNA methylation profiles of 276 primary medulloblastoma and 8 normal cerebellum control samples were generated from fresh-frozen and formalin-fixed paraffin-embedded material using the Illumina 450k methylation array.
Contributor(s) Hovestadt V, Jones DT, Radlwimmer B, Pfister SM, Lichter P
Citation(s) 23670100, 24847876
Submission date Feb 11, 2014
Last update date Mar 22, 2019
Contact name Peter Lichter
Organization name German Cancer Research Center
Department Molecular Genetics
Street address Im Neuenheimer Feld 580
City Heidelberg
ZIP/Postal code 69120
Country Germany
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (284)
GSM1325501 ICGC_MB1
GSM1325502 ICGC_MB2
GSM1325503 ICGC_MB3
BioProject PRJNA237960

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54880_MB-450k_GEOupload_Beta.txt.gz 572.7 Mb (ftp)(http) TXT
GSE54880_MB-450k_GEOupload_Raw.txt.gz 1.2 Gb (ftp)(http) TXT
GSE54880_RAW.tar 183.1 Mb (http)(custom) TAR
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap