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Series GSE54647 Query DataSets for GSE54647
Status Public on Feb 04, 2014
Title VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary The objective of the study was to utilize DNA methylation to quantify human leukocyte subsets in human blood. This file contains data from an Illumina custom VeraCode GGMA microarray for human leukocyte subtypes (purified from whole blood samples via magnetic activated cell sorting (MACS) and purity confirmed by flourescence activated cell sorting (FACS)) as well as for complex mixtures of DNA from those samples, and for human whole blood samples.
Overall design Bisulfite converted DNA from the samples were hybridized to an Illumina Custom VeraCode GGMA microarray.
Contributor(s) Accomando WP, Wiencke JK, Kelsey KT
Citation(s) 24598480
Submission date Feb 04, 2014
Last update date May 08, 2015
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL18246 Illumina Custom VeraCode GoldenGate Methylation Assay (GGMA) microarray
Samples (158)
GSM1320640 genomic DNA from Heparin, Fresh Human whole blood (3093HepFr)
GSM1320641 genomic DNA from Granulocytes Purified WBC subtype (Gran532)
GSM1320642 genomic DNA from Citrate, o/n at 4C Human whole blood (3082Cit4C)
This SubSeries is part of SuperSeries:
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation
BioProject PRJNA237278

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54647_signal_intensities.txt.gz 287.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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