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Series GSE54399 Query DataSets for GSE54399
Status Public on Mar 01, 2014
Title Stress, heritability, tissue type and human methylome variation.
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genomewide methylation profiles from three tissues (cord blood, placenta, venous blood) derived from 24 mother-child dyads. Data was assayed with the Illumina HumanMethylation 450K Beacdchip and processed with Illumina's GenomeStudio V2011.1 Methylation Module v1.9.0
Overall design Bisulfite converted DNA from three tissues derived from 24 dyads, totalling 72 samples, were hybridized to the Illumina HumanMethylation450 BeadChips following the manufacturer's specifications.

Cord blood samples C1 and C20 in GSE54399 have been shown to have maternal blood contamination in an analysis reported in Morin et al., 2017, Clinical Epigenetics. Sample C1 likely has maternal blood contamination due to improper sample collection and Sample C20 is likely to be a mis-labeled maternal venous blood sample. These samples (GSM1314363 and GSM1314382) have been removed from this series.
Contributor(s) Hughes DA, Rodney NC, Mulligan C
Citation(s) 29017633, 25043696, 28680507
Submission date Jan 24, 2014
Last update date Jul 11, 2019
Contact name Connie Mulligan
Organization name University of Florida
Department Department of Anthropology
Street address 2033 Mowry Road
City Gainesville
State/province Florida
ZIP/Postal code 32610-3610
Country USA
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (70)
GSM1314364 C2c_2 normal whole cord blood sample
GSM1314365 C3c normal whole cord blood sample
GSM1314366 C4c normal whole cord blood sample
BioProject PRJNA236396

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54399_RAW.tar 183.1 Mb (http)(custom) TAR
GSE54399_unmethylated_methylated.txt.gz 159.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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