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Series GSE54084 Query DataSets for GSE54084
Status Public on Jan 15, 2014
Title Otx2 ChIP-seq in the adult mouse Retinal Pigmented Epithelium (RPE) and neural retina
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Otx2 has been shown to be non cell autonomously required for photoreceptor cell survival in the adult mouse RPE. This study aims to identify Otx2 DNA binding profile in both RPE and neural retina to i) identify direct targets of Otx2 in the RPE ii) compare Otx2 binding profile in neural retina and RPE to unveil hidden functions in the neural retina.
Overall design WT and GFP antibodies were used to perform two independent ChIP-seq experiments using Illumina GAIIx.
Contributor(s) Lamonerie T, Samuel A, Housset M
Citation(s) 24558479
Submission date Jan 14, 2014
Last update date May 15, 2019
Contact name Alexander Samuel
Organization name CNRS, INSERM, Université de Nice Sophia-Antipolis
Department Institute of Biology Valrose
Lab Neurodevelopment
Street address Parc Valrose
City Nice
ZIP/Postal code 06000
Country France
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (7)
BioProject PRJNA234770
SRA SRP035396

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54084_RAW.tar 2.6 Gb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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