 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Mar 31, 2014 |
| Title |
NRROS negatively regulates ROS in phagocytes during host defense and autoimmunity |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
|
| Summary |
Production of reactive oxygen species (ROS) is one of the important antimicrobial mechanisms of phagocytic cells. Enhanced oxidative burst requires these cells to be primed with agents such as IFNg and LPS with a synergistic effect of these agents on the level of the burst. However, excessive ROS generation will lead to tissue damage and has been implicated in a variety of inflammatory and autoimmune disease. Therefore, this process needs to be tightly regulated. In order to understand the genes regulating this process, we will treat bone marrow derived macrophages with above mentioned priming agents and study the gene expression.
We used microarrays to determine the changes in gene expression that occur in bone marrow derived macrophages after treatment with IFNg, LPS, or a combination of IFNg and LPS
|
| |
|
| Overall design |
Four condition experiment; Biological replicates: four replicates per condition
|
| |
|
| Contributor(s) |
Noubade R, Wong K, Ota N, Rutz S, Eidenschenk C, Ding J, Valdez PA, Peng I, Sebrell A, Caplazi P, DeVoss J, Soriano RH, Modrusan Z, Hackney JA, Sai T, Ouyang W |
| Citation(s) |
24739962 |
| |
| Submission date |
Jan 10, 2014 |
| Last update date |
Feb 11, 2019 |
| Contact name |
Jason A Hackney |
| E-mail(s) |
hackney.jason@gene.com
|
| Organization name |
Genentech, Inc.
|
| Department |
Department of Bioinformatics and Computational Biology
|
| Street address |
1 DNA Way
|
| City |
South San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94080 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL1261 |
[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array |
|
| Samples (16)
|
| GSM1304839 |
BMDM, untreated, 4 |
| GSM1304840 |
BMDM, IFNg, 1 |
| GSM1304841 |
BMDM, IFNg, 2 |
| GSM1304842 |
BMDM, IFNg, 3 |
| GSM1304843 |
BMDM, IFNg, 4 |
| GSM1304844 |
BMDM, LPS, 1 |
| GSM1304845 |
BMDM, LPS, 2 |
| GSM1304846 |
BMDM, LPS, 3 |
| GSM1304847 |
BMDM, LPS, 4 |
| GSM1304848 |
BMDM, IFNg+LPS, 1 |
| GSM1304849 |
BMDM, IFNg+LPS, 2 |
| GSM1304850 |
BMDM, IFNg+LPS, 3 |
| GSM1304851 |
BMDM, IFNg+LPS, 4 |
|
| Relations |
| BioProject |
PRJNA234284 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE53986_RAW.tar |
60.9 Mb |
(http)(custom) |
TAR (of CEL, CHP) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
|
|
|
|
 |
Less...
More...