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Series GSE53939 Query DataSets for GSE53939
Status Public on Jan 09, 2014
Title The Demethylase JMJD2C/KDM4C Localizes to H3K4me3 Positive Transcription Start Sites (ChIP-seq MEFs)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We have mapped binding sites for the histone demethylase, Jmjd2c/Kdm4c/Gasc1, in mouse embryonic fibroblasts (MEFs) and the impact of Jmjd2c depletion on H3K9me3 and H3K36me3 distributions.
Overall design ChIP-seq was performed using antibodies recognizing Jmjd2c, H3K9me3 or H3K36me3. Chromatin was obtained from conditional Jmjd2c knockout MEFs cultured in the absence or presence of OHT to induce activation of Cre recombinase and loss of Jmjd2c expression.
Contributor(s) Pedersen MT
Citation(s) 24396064
Submission date Jan 09, 2014
Last update date May 15, 2019
Contact name Marianne Terndrup Pedersen
Organization name BRIC
Department University of Copenhagen
Lab Kim B. Jensen
Street address Ole Maaloes Vej 5
City Copenhagen N
ZIP/Postal code 2200
Country Denmark
Platforms (2)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (7)
GSM1303759 MEF_Jmjd2c
GSM1303760 MEF_OHT_Jmjd2c
GSM1303761 MEF_IgG
This SubSeries is part of SuperSeries:
GSE28332 The Demethylase JMJD2C/KDM4C Localizes to H3K4me3 Positive Transcription Start Sites
BioProject PRJNA233999
SRA SRP035262

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53939_RAW.tar 1.4 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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