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Series GSE53938 Query DataSets for GSE53938
Status Public on Jan 09, 2014
Title The Demethylase JMJD2C/KDM4C Localizes to H3K4me3 Positive Transcription Start Sites (ChIP-seq KYSE150 cell line)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We have mapped binding sites for the histone demethylase, JMJD2C/KDM4C/GASC1, and the effect of JMJD2C depletion on H3K9me3 and H3K36me3 distributions in KYSE150 cells. The human esophageal carcinoma cell line, KYSE150, contains an amplification of the JMJD2C locus.
Overall design ChIP-seq was performed using chromatin from control or JMJD2C-depleted KYSE150 cells and antibodies recognizing JMJD2C, H3K4me3, H3K9me3 or H3K36me3.
Contributor(s) Pedersen MT
Citation(s) 24396064
Submission date Jan 09, 2014
Last update date May 15, 2019
Contact name Marianne Terndrup Pedersen
Organization name BRIC
Department University of Copenhagen
Lab Kim B. Jensen
Street address Ole Maaloes Vej 5
City Copenhagen N
ZIP/Postal code 2200
Country Denmark
Platforms (2)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (8)
GSM1303751 KYSE150_shCtrl_JMJD2C
GSM1303752 KYSE150_shJMJD2C_JMJD2C
GSM1303753 KYSE150_IgG
This SubSeries is part of SuperSeries:
GSE28332 The Demethylase JMJD2C/KDM4C Localizes to H3K4me3 Positive Transcription Start Sites
BioProject PRJNA234001
SRA SRP035261

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53938_RAW.tar 1.7 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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