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Series GSE53536 Query DataSets for GSE53536
Status Public on Dec 04, 2014
Title DNA binding activities of the C-clamp
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Investigated the DNA binding specificity of the C-clamp of dnTCF1E
Overall design Used a doxycycline inducible system to investigate the role of the C-clamp in the genome-wide binding of dnTCF1E. Induced dnTCF1EWT and dnTCF1Emut (C-clamp mutant that is null for C-clamp DNA binding) over 2 time points (2 hours and 9 hours). A 0 hour (no doxycycline, uninduced) control was also included.
Contributor(s) Hoverter NP, Zeller M, Baldi P, Waterman ML
Citation(s) 25414359
Submission date Dec 20, 2013
Last update date May 15, 2019
Contact name Michael Zeller
Organization name University of California, Irvine
Department Computer Science
Lab Pierre Baldi
Street address 241 ICS 2
City Irvine
State/province California
ZIP/Postal code 92697
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (8)
GSM1295629 dnTCF1EWT Input
GSM1295630 dnTCF1EWT 0hrs
GSM1295631 dnTCF1EWT 2hrs
BioProject PRJNA232323
SRA SRP034659

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53536_RAW.tar 22.6 Gb (http)(custom) TAR (of BED, TXT, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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