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Series GSE53051 Query DataSets for GSE53051
Status Public on Nov 30, 2014
Title Large hypomethylated blocks related to large heterochromatin regions as a universal defining epigenetic alteration in human solid tumors
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Examined methylation status using HumanMethylation450 BeadChip for samples from 5 different tissue of normal, hyperplastic, adenoma, cancer and metastatic samples.
Overall design Bisulfite converted DNA from the samples were hybridized to the Illumina Infinium 450k Human Methylation Beadchip.
Contributor(s) Timp W, Irizarry RI, Feinberg AP
Citation(s) 25191524
Submission date Dec 05, 2013
Last update date Mar 22, 2019
Contact name Winston Timp
Phone 410-417-8467
Organization name Johns Hopkins University
Department Biomedical Engineering
Lab Timp Lab
Street address 3400 N. Charles St. Clark 102A
City Baltimore
State/province MD
ZIP/Postal code 21218
Country USA
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (220)
GSM1281076 Colon_Cancer_6
GSM1281077 Lung_Cancer_6
GSM1281078 Pancreas_Cancer_6
BioProject PRJNA230755

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53051_RAW.tar 183.1 Mb (http)(custom) TAR
GSE53051_raw_methylated_signals.csv.gz 224.3 Mb (ftp)(http) CSV
GSE53051_raw_unmethylated_signals.csv.gz 229.9 Mb (ftp)(http) CSV
Processed data included within Sample table

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