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Series GSE53020 Query DataSets for GSE53020
Status Public on Jun 16, 2014
Title Domain ChIRP reveals the modularity of long noncoding RNA architecture, function, and target genes
Organism Drosophila melanogaster
Experiment type Other
Summary Here we identify RNA-RNA, RNA-protein, and RNA-chromatin interactions of the roX1 lncRNA involved in dosage compensation in Drosophila.
 
Overall design Identification of lncRNA-occupied genomic sites by Domain ChIRP in chromatin prepared from Clone 8 cells (D. melanogaster, male cell line).
 
Contributor(s) Quinn JJ, Qu K, Chang HY
Citation(s) 24997788
Submission date Dec 05, 2013
Last update date May 15, 2019
Contact name Kun Qu
E-mail(s) kqu@stanford.edu
Organization name Stanford University
Department Dermatology
Lab Howard Chang
Street address 269 Campus Dr. CCSR 2150
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (2)
GPL11203 Illumina Genome Analyzer IIx (Drosophila melanogaster)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (12)
GSM1280456 Clone8_input
GSM1280457 roX2_Even
GSM1280458 roX2_Odd
Relations
BioProject PRJNA230684
SRA SRP033531

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53020_Clone8_input.bw 263.0 Mb (ftp)(http) BW
GSE53020_LacZ_control.bw 104.5 Mb (ftp)(http) BW
GSE53020_roX1_D2_merge.bw 305.5 Mb (ftp)(http) BW
GSE53020_roX1_D3_471_peak_summits.bed.gz 4.0 Kb (ftp)(http) BED
GSE53020_roX1_D3_merge.bw 281.4 Mb (ftp)(http) BW
GSE53020_roX1_U1_merge.bw 204.6 Mb (ftp)(http) BW
GSE53020_roX1_merge.bw 213.6 Mb (ftp)(http) BW
GSE53020_roX2_merge.bw 183.7 Mb (ftp)(http) BW
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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