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Series GSE52865 Query DataSets for GSE52865
Status Public on Feb 04, 2015
Title A DNA methylation definition of biologically distinct breast cancer subtypes
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome wide DNA methylation profiling of normal and tumoral tissues of the breast. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 450 thousand CpGs in fresh frozen tissue samples (40 primary breast tumours and 17 normal breast tissues). Samples included morphologically normal samples of each tissue and tumor samples.
Overall design Bisulphite converted DNA from the 57 samples were hybridised to the Illumina Infinium 450k Human Methylation Beadchip.
Contributor(s) Stefansson OA, Esteller M
Citation(s) 25468711
Submission date Dec 02, 2013
Last update date Mar 22, 2019
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (57)
GSM1277199 OAS_T1
GSM1277200 OAS_T104
GSM1277201 OAS_T105
BioProject PRJNA230392

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52865_RAW.tar 183.1 Mb (http)(custom) TAR
GSE52865_complete_data.txt.gz 685.9 Mb (ftp)(http) TXT
Processed data included within Sample table

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