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Series GSE52344 Query DataSets for GSE52344
Status Public on Nov 01, 2014
Title Myeloid Dendritic Cells Induce HIV-1 Latency in Non-Proliferating CD4+ T Cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Latently infected resting CD4+ T cells are a major barrier to HIV cure. Understanding how latency is established, maintained and reversed is critical to identifying novel strategies to eliminate latently infected cells. We demonstrate here that co-culture of resting CD4+ T cells and syngeneic myeloid dendritic cells (mDC) can dramatically increase the frequency of HIV DNA integration and latent HIV infection in non-proliferating memory, but not naïve, CD4+ T cells. Gene expression in non-proliferating CD4+ T cells, enriched for latent infection, showed significant changes in the expression of genes involved in cellular activation and interferon regulated pathways, including the down-regulation of genes controlling both NF-κB and cell cycle. We conclude that mDC play a key role in the establishment of HIV latency in resting memory CD4+ T cells, which is predominantly mediated through signalling during DC-T cell contact.
 
Overall design Resting (CD69-CD25-HLA-DR-) CD4+ T cells were enriched from the blood of 4 normal donors by magnetic bead depletion and labelled with the proliferation dye SNARF. SNARFhiEGFP- CD4+ T cells cultured with (+DC) or without syngeneic bulk DC (lin-HLA-DR+), in the presence (HIV T) or absence (Mock T) of HIV, were sorted 5 days following infection with NL(AD8)-nef/EGFP (MOI 5).Culture media was supplemented with 10ng/mL of IL-7. The gene expression profile of the 4 cell populations: 1. HIV T (+DC); 2. Mock T (+DC); 3. HIV T; and 4. Mock T, was determined.
 
Contributor(s) Vanessa AE, Filali-Mouhim A, Procopio FA, Yegorov O, Goulet JP, Saleh S, Haddad EK, Sekaly RP, Cameron PU, Lewin SR, Pan L, Cameron M, Wilkinson PA
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Submission date Nov 13, 2013
Last update date Mar 20, 2017
Contact name Peter A Wilkinson
Organization name Case Western Reserve University
Department Pathology / Systems Biology & Bioinformatics
Street address 2103 Cornell Road
City Cleveland
State/province Ohio
ZIP/Postal code 44120
Country USA
 
Platforms (1)
GPL6883 Illumina HumanRef-8 v3.0 expression beadchip
Samples (22)
GSM1263754 Mock_ctrl_D1
GSM1263755 Mock_CCL19_D1
GSM1263756 Mock_DC_D1
Relations
BioProject PRJNA227454

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52344_RAW.tar 3.9 Mb (http)(custom) TAR
GSE52344_non-normalized.txt.gz 2.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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