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Series GSE51726 Query DataSets for GSE51726
Status Public on Sep 24, 2014
Title Genome-wide Dnase-Seq profiles in Hodgkin's and non-Hodgkin's lymphoma
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report corresponding gene expression, promoter methylation patterns of differential DHSs as well as differentially occupied TF binding motifs using surrounding DNAseI cut profiles. Overall, our study provides a framework for model studies of HL and NHL pathologies.
Overall design Examination of genome-wide DNaseI hypersensitive sites in L1236, L428, L591, Reh and Namalwa cell lines.
Contributor(s) Bouhlel A, Cauchy P, Kreher S, Köcher K, Lamprecht B, Cockerill PN, Mathas S, Bonifer C
Citation(s) 25288773
Submission date Oct 25, 2013
Last update date May 15, 2019
Contact name Pierre Daniel Cauchy
Phone +49 (0)761 270-77576
Organization name University Medical Center Freiburg
Department Zentrum für Translationale Zellforschung
Lab AG Onco-Immunology
Street address Breisacher Str. 115
City Freiburg
State/province Baden-Württemberg
ZIP/Postal code 79106
Country Germany
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (5)
GSM1251561 L1236 DNAse-Seq
GSM1251562 L428 DNAse-Seq
GSM1251563 L591 DNAse-Seq
This SubSeries is part of SuperSeries:
GSE51814 Genome-wide DNase-Seq and methylation profiles in Hodgkin's and non-Hodgkin's lymphoma
BioProject PRJNA224726
SRA SRP031982

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE51726_RAW.tar 147.1 Mb (http)(custom) TAR (of GFF, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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