|
| Status |
Public on Sep 24, 2014 |
| Title |
Genome-wide Dnase-Seq profiles in Hodgkin's and non-Hodgkin's lymphoma |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report corresponding gene expression, promoter methylation patterns of differential DHSs as well as differentially occupied TF binding motifs using surrounding DNAseI cut profiles. Overall, our study provides a framework for model studies of HL and NHL pathologies.
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| |
|
| Overall design |
Examination of genome-wide DNaseI hypersensitive sites in L1236, L428, L591, Reh and Namalwa cell lines.
|
| |
|
| Contributor(s) |
Bouhlel A, Cauchy P, Kreher S, Köcher K, Lamprecht B, Cockerill PN, Mathas S, Bonifer C |
| Citation(s) |
25288773 |
| Submission date |
Oct 25, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Pierre Daniel Cauchy |
| E-mail(s) |
cauchy@ie-freiburg.mpg.de
|
| Phone |
+49 (0)761 5108-730
|
| Organization name |
Max Planck Institute of Immunobiology and Epigenetics
|
| Department |
Department of Cellular and Molecular Immunology
|
| Lab |
Laboratory Rudolf Grosschedl
|
| Street address |
Stübeweg 51
|
| City |
Freiburg |
| State/province |
Baden-Württemberg |
| ZIP/Postal code |
79108 |
| Country |
Germany |
| |
|
| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
|
| Samples (5)
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| This SubSeries is part of SuperSeries: |
| GSE51814 |
Genome-wide DNase-Seq and methylation profiles in Hodgkin's and non-Hodgkin's lymphoma |
|
| Relations |
| BioProject |
PRJNA224726 |
| SRA |
SRP031982 |
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