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| Status |
Public on Sep 27, 2013 |
| Title |
Light and BcLTF1-dependent gene expression profiles in the phytopathogenic fungus Botrytis cinerea |
| Organism |
Botrytis cinerea |
| Experiment type |
Expression profiling by array
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| Summary |
Full transcriptomes of the Botrytis cinerea wild-type strain B0510 and the null-mutant deltaBcLTF1, cultured in continuous darkness or submitted to a light stimulation, were compared to identify light- or/and BcLTF1-dependent genes.
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| Overall design |
The Botrytis cinerea wild-type strain and the null-mutant deltaBcLTF1 were cultured for 52h in continuous darkness ; then, cultures were exposed for 60 min to light before harvest (L) or were harvested after additional 60 min darkness (D). 4 replicates were performed. The 16 total-RNA samples (4 conditions* 4 replicates) were used for hybridization on NimbleGen 4plex gene expression arrays (20,885 gene models from Botrytis cinerea with three 60-mer probes per gene).
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| Contributor(s) |
Schumacher J, Simon A, Cohrs KC, Viaud M, Tudzynski P |
| Citation(s) |
24415947 |
| |
| Submission date |
Sep 26, 2013 |
| Last update date |
Jan 17, 2014 |
| Contact name |
Adeline SIMON |
| Organization name |
INRAE
|
| Lab |
BIOGER
|
| Street address |
22 place de l'agronomie
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| City |
Palaiseau |
| ZIP/Postal code |
91120 |
| Country |
France |
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| Platforms (1) |
| GPL17773 |
NimbleGen - Botrytis cinerea - 4*72K - INRA improved (2009) [091123_INRA_Botrytis_expr] |
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| Samples (16)
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| Relations |
| BioProject |
PRJNA221571 |
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